Glyma16g03320 - SoyBase

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Report for Sequence Feature Glyma16g03320

Feature Type:	gene_model
Chromosome:	Gm16
Start:	2829076
stop:	2834759
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g03320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46240	AT	Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 6 \| chr2:18986586-18989827 FORWARD LENGTH=1043	SoyBase	E_val: 6.00E-40	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0012502	GO-bp	Annotation by Michelle Graham. GO Biological Process: induction of programmed cell death	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0051087	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chaperone binding	SoyBase	N/A	ISS
PF02179	PFAM	BAG domain	JGI		ISS
UniRef100_D7LDX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BCL-2-associated athanogene 6 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LDX9_ARALL	SoyBase	E_val: 1.00E-55	ISS
UniRef100_I1KI14	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI14_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g03320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g03320

Paralog	Evidence	Comments
Glyma07g06750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g03320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g030000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g03320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g03320

Limit To All Plant Sequences

>Glyma16g03320.2   sequence type=CDS   gene model=Glyma16g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCCTGCATATAGAAGCATGGACTCATACCCATATCAGAGAAACCAAATACCTTTCCCACATTATTATCATCCTGGCATTGAACCTATTCACCCTCAAATGAAGCTTGATCCATCCAAACCACCCTTTTCTTATGACCAACATTGGCCATATGCTGGCAACTTAGGGCACCCTATTCCCCCACATTTCTGCTGTGGCCACAACAACTTCCCTTGTCATTATAGCTACATGCCTTCAAATCCTCATGCTCCTTCTCCAATGTACTATTCTGGAACTTGTCCTTCATATAGTGAACCATATTTTGTTCCTTATTCACTACAACCACATTATACTATGGATCTGCCCAGGTATGAATATGACAAATTTATGCCCCGAGAGCATCATTGTTGTGGCTGTCCTAATCATCCATGCAGCCAAAAGGAAGGTAGAAGTGTGAAGATTGAAGAACATGAACCTGATGGTGGAAAGAAAGTGAATGATGCTTTGGCTCCAATCCAGCTCAAGAATTACCCATATCCCTTAGTTTGGATTCCACAGGAGTACACAAGTAACAAACAGCTGAAGAATCCTAATACAATGGAAGTTGGGGAACAAGACAAGTCTCCTCGTTTTGAGAATTCTAATGCTGATGCACAGCCAGCACAGGATCCTAGAGTATGGAATGGATGGCTTCCCTTCAATATAAAGGGTGCCCCGAACGTGATTCACGATGGATATGGAACAAGAAACCAGAAACAGGAGTCTGGCAATAATAGAGGGGAATCTGAAGATGGAAAAGTGGACCAGAAACATCAAAGTGAACAGAATAGGTCAGAATTTCCATTCCCTATCTTCTGGTTGCCTTATTACAATAAGCCGGAGGAGGGTGGTGAGACTAAAAACCAGGAGAAGAATACTTTTTCACCAAAAGTTATTGAGGAGGTACCCCATACATTAAAATCTGTTCCAGCAAAGTCTCATGTTGATGAAGGTGGTAGGAATAGGAACGGAACCGGATCAAATCAAGCTGAATACACAAATACAAATGCTGCGGATGTTGTAGAGAAAGTGACTAATGCCAGAAGCATACCTGTGAAGCAAATGGAAGAGAATGTGACAAAAAAGGACTCCTGCACTGGTGACAAAAAGAGGCAATCTGCATCTTCACCAAAAGGATCCAAGTTACCTCCGGTTTGTCTGAGAGTTGATCCACTACCAAGGAAGAAAAATGGCAACGGGAGTTTGAGTTTGAGTTCAAGGTCGAGGTCCCCAAGTCCACCTTCATCAAAAGGGCAATCCCAAGCTACAACTGGTGAAACATTCAAGACTCCTGTGAGTGGAACACATGATAAAGGTCAGCCAAATTCGGATCATCAGAATGGGCCAACAAACACCAGTGAGAGAGTTAAACCAAAGGAGAAGACCATTCCGGTGTCAGAAATATGCAAGACTAATGAAAACCAGGGTGTTGAGTGTAGGGATGGATGTCAAAGCCAGATAAATGTAAACATACCTAGTGAAGATCCGAAAGGGACAAGGGGAACATGTCCAGATGGTGATGACTTCAAGACTGAAGATAAAAAGGCAGATAAAGGGGCAGATAAAATGAGGGAGAAAACTGCAGAACTAAAAGATGTGAAGGATTCAAGCGCACAAACTGACGCAGGTCAAAAGGAGGTAAGAGTTCTGTCAGATGCAGATGCTTCTGTTTTGATACAAGCTGCATATCGCGGACATCAAGTTAGAAAATGGGAAGCATTGAAGAAGTTGAAGCAGATAGATGAAGTCAGGAAGGAGGTGACTGATGTTCGAGACCGTGTTCAAGCCTTTGAGAGATCTTCTGATCTTCAAAATGATGACAAGCAAAAAATTGCAATTGGAGAGACCATTATGAGACTCCTGCTGAAGTTGGATACTATACAGGGTTTGCATCCAAGTATCAGGGAGATCAGAAAATCCTTGGCTAGAGAGCTGACAATTTTGCAAGAAAGGCTTGATTATATAATGGCCAAGAAACCTCAGCAGCAGGTGCAGGATTTCAATGTTCAGGAACATGTTGAAGTCACTCCAATGAATATGCAGAATGAAGAACAAGTTGCTGTACCAGCAGACTCAGCTGAAGGCATTAGTGATGATGCAAAAGGTCCTTGTGCTAATGTTGGTGGAAGTGAATCCCAGTCACCAGTTGATCCTACATCAGATAAGGGAGCAGAGTCTGTTGTGCTTCCGAATGGCTCGCATAATGATGATACTAGCCAAGTGGTTACAGATGACACATTGAATTCTACAAGTGATCTGTCTGAGACGGACAAAATGGCTGTGGAACCCGAAGCTAAATCAGAAGCGAAAGACATTCCCACTGCGGAAGACATTCTAAACGAGGTTGATAAATTGTATAAGACTGTTTTGGAAGAATTTCCTGTGGGAGTTGTTGATGAAGATATCGATGATGTTATTATTGAGAAGGAAGAACAAGATGATGTTAGTTCTGGAAGTCTCCAAGCCATGGTGGATGATTCGGCACGAGATGGATTAGAGAACCATGCAATGATGGAAATGCCAGTGGGATTATTTGATGAGGATGAAAGGAACAATGAAATGAATATTTCTAAAGAGGGAACACAAACTGAGAATGACATATTTATTGAGCTTCCTATGGGACTACTTGATGAGGATACAGCAATATCTGAAGTTAAGAAGCACGATCGAGCTAAGCCTAAAACATATAAAGAGGTTCTACTAGCTCAAGAAGGGGAATGCAATGCAGATGAGAAAACAAGTTCTTCAACAGATAACACTGCGAACGAAACTCAACTAGGGCAACAGCAGAAGCTGGAAGAGCAAAAAGAGGTGCATTCTTCTGGGGAATGCTGGGTGAAAATCAAGTACCAGGAAGAAGGTGAACTCAATGGTGATGCACCAATAGATATAAGAACTGAGTGTAAGTCAGGTGAGGAAGTTGAAAATGATACTAAGTTACCTCCTTTGACAACACAAGTCAATGATCATGGACCAGGAAATGAAGATGTATGCTCAAAAGCAAATGATGTAAATAACATATCGCCCGAGGCCAAGCCAATGGAGTTAGTACCTTCCAATGAAACACAGAAGGAGGAGGAACCAGAAGAGAAGATTGCACTTAGGGAGACACAAGAGATGGTTACTGAGCAGGCAATTGGTGCTGATGATAAAGACCCAGAAGCTTTGTTTAAAGAGAAAACCGAACTATCTTCGCCTCCACCTGCATTACAAGAACCTGAGCTGCCTGCGGCCATGCGCGATGGAGAGTTCAACGGTGACACGAAGTTACTGGAAGAGAATGAGAATTTAAGGGAGATGATGAAGAAGTTGCTTGAAGCCGGGAATGAACAGTTAAGCGTGATAACAAATTTGACTGGCAGAGTGAAGGACTTGGAGAAGAAACTAGCCAGGAGCAGGAGTAAGAGAGTGAAGACAAAACGGTATAGACCAGCAACTTCCAAAATGTCTTGCATGAAATGA

Predicted protein sequences of Glyma16g03320

Limit To All Plant Sequences

>Glyma16g03320.2   sequence type=predicted peptide   gene model=Glyma16g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMPAYRSMDSYPYQRNQIPFPHYYHPGIEPIHPQMKLDPSKPPFSYDQHWPYAGNLGHPIPPHFCCGHNNFPCHYSYMPSNPHAPSPMYYSGTCPSYSEPYFVPYSLQPHYTMDLPRYEYDKFMPREHHCCGCPNHPCSQKEGRSVKIEEHEPDGGKKVNDALAPIQLKNYPYPLVWIPQEYTSNKQLKNPNTMEVGEQDKSPRFENSNADAQPAQDPRVWNGWLPFNIKGAPNVIHDGYGTRNQKQESGNNRGESEDGKVDQKHQSEQNRSEFPFPIFWLPYYNKPEEGGETKNQEKNTFSPKVIEEVPHTLKSVPAKSHVDEGGRNRNGTGSNQAEYTNTNAADVVEKVTNARSIPVKQMEENVTKKDSCTGDKKRQSASSPKGSKLPPVCLRVDPLPRKKNGNGSLSLSSRSRSPSPPSSKGQSQATTGETFKTPVSGTHDKGQPNSDHQNGPTNTSERVKPKEKTIPVSEICKTNENQGVECRDGCQSQINVNIPSEDPKGTRGTCPDGDDFKTEDKKADKGADKMREKTAELKDVKDSSAQTDAGQKEVRVLSDADASVLIQAAYRGHQVRKWEALKKLKQIDEVRKEVTDVRDRVQAFERSSDLQNDDKQKIAIGETIMRLLLKLDTIQGLHPSIREIRKSLARELTILQERLDYIMAKKPQQQVQDFNVQEHVEVTPMNMQNEEQVAVPADSAEGISDDAKGPCANVGGSESQSPVDPTSDKGAESVVLPNGSHNDDTSQVVTDDTLNSTSDLSETDKMAVEPEAKSEAKDIPTAEDILNEVDKLYKTVLEEFPVGVVDEDIDDVIIEKEEQDDVSSGSLQAMVDDSARDGLENHAMMEMPVGLFDEDERNNEMNISKEGTQTENDIFIELPMGLLDEDTAISEVKKHDRAKPKTYKEVLLAQEGECNADEKTSSSTDNTANETQLGQQQKLEEQKEVHSSGECWVKIKYQEEGELNGDAPIDIRTECKSGEEVENDTKLPPLTTQVNDHGPGNEDVCSKANDVNNISPEAKPMELVPSNETQKEEEPEEKIALRETQEMVTEQAIGADDKDPEALFKEKTELSSPPPALQEPELPAAMRDGEFNGDTKLLEENENLREMMKKLLEAGNEQLSVITNLTGRVKDLEKKLARSRSKRVKTKRYRPATSKMSCMK*

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