SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G12740 | AT | Annotation by Michelle Graham. TAIR10: HhH-GPD base excision DNA repair family protein | chr4:7494578-7497596 REVERSE LENGTH=630 | SoyBase | E_val: 2.00E-62 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| PTHR10359 | Panther | A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III | JGI | ISS | |
| PTHR10359:SF1 | Panther | ENDONUCLEASE III | JGI | ISS | |
| UniRef100_Q2QW21 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: A/G-specific adenine glycosylase family protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QW21_ORYSJ | SoyBase | E_val: 6.00E-64 | ISS |
| UniRef100_UPI0002337ED0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337ED0 related cluster n=1 Tax=unknown RepID=UPI0002337ED0 | SoyBase | E_val: 5.00E-145 | ISS |
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Glyma16g03151 not represented in the dataset |
Glyma16g03151 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g06560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g028600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g03151.2 sequence type=transcript gene model=Glyma16g03151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTTCACTTGGGGCAACTGTGTGCACCCCTTTGAACCCAAGCTGTTCCTCATGTCCAGCATCAGAATTTTGTCATGCACTATCAAATGCTAAACATGATAGTACAGTAGCAGTTACAGATTATCCTGTTAAGGGTGTGAAGGTTAAACAAAGATGTGATTTTTCTGCTGTATGTGTTGTTGAATTAGTTGGAGCTGAAACGTTAGATAAAAACCAGTCTAGCAGCAAGTTTATTCTTGTCAAAAGACCTGAAGAAGGATTGCTTGCTGGTCTCTGGGAATTTCCATCTGTCTTACTGGATGGAGAAGCAGTTCCATTAGCTAGAAGAGAAGCAATGGATCCCTTCTTGAAAAAAAATCTCAAAATTGACATCAGAAAGACTTGCAATATAGTTTTGAGGGAAGATATTGGGGAATTTGTTCACATTTTCAGTCACATTCGCCTCAAGTTGTATGTTGAATTGCTAGTGTTACAATTGAAAGGAGTAGATGATTTGTTCAAAAGCCTGGACAATAAAGCAACAACTTGGAAGTGCATTTACAGCAATGCACTTTCTAGTATGGGACTGACAACCAGTGTAAGAAAGGTGTACAACATGGTTCAAAACTTCAAGCAGAAAACTCTTCCTTCTAACCATGTGCCAACCAAAAAGAGAAGTAGAACGACCACAAGAAAATAG
>Glyma16g03151.1 sequence type=CDS gene model=Glyma16g03151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTTCACTTGGGGCAACTGTGTGCACCCCTTTGAACCCAAGCTGTTCCTCATGTCCAGCATCAGAATTTTGTCATGCACTATCAAATGCTAAACATGATAGTACAGTAGCAGTTACAGATTATCCTGTTAAGGGTGTGAAGGTTAAACAAAGATGTGATTTTTCTGCTGTATGTGTTGTTGAATTAGTTGGAGCTGAAACGTTAGATAAAAACCAGTCTAGCAGCAAGTTTATTCTTGTCAAAAGACCTGAAGAAGGATTGCTTGCTGGTCTCTGGGAATTTCCATCTGTCTTACTGGATGGAGAAGCAGTTCCATTAGCTAGAAGAGAAGCAATGGATCCCTTCTTGAAAAAAAATCTCAAAATTGACATCAGAAAGACTTGCAATATAGTTTTGAGGGAAGATATTGGGGAATTTGTTCACATTTTCAGTCACATTCGCCTCAAGTTGTATGTTGAATTGCTAGTGTTACAATTGAAAGGAGGAGTAGATGATTTGTTCAAAAGCCTGGACAATAAAGCAACAACTTGGAAGTGCATTTACAGCAATGCACTTTCTAGTATGGGACTGACAACCAGTGTAAGAAAGGTGTACAACATGGTTCAAAACTTCAAGCAGAAAACTCTTCCTTCTAACCATGTGCCAACCAAAAAGAGAAGTAGAACGACCACAAGAAAATAG >Glyma16g03151.2 sequence type=CDS gene model=Glyma16g03151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTTCACTTGGGGCAACTGTGTGCACCCCTTTGAACCCAAGCTGTTCCTCATGTCCAGCATCAGAATTTTGTCATGCACTATCAAATGCTAAACATGATAGTACAGTAGCAGTTACAGATTATCCTGTTAAGGGTGTGAAGGTTAAACAAAGATGTGATTTTTCTGCTGTATGTGTTGTTGAATTAGTTGGAGCTGAAACGTTAGATAAAAACCAGTCTAGCAGCAAGTTTATTCTTGTCAAAAGACCTGAAGAAGGATTGCTTGCTGGTCTCTGGGAATTTCCATCTGTCTTACTGGATGGAGAAGCAGTTCCATTAGCTAGAAGAGAAGCAATGGATCCCTTCTTGAAAAAAAATCTCAAAATTGACATCAGAAAGACTTGCAATATAGTTTTGAGGGAAGATATTGGGGAATTTGTTCACATTTTCAGTCACATTCGCCTCAAGTTGTATGTTGAATTGCTAGTGTTACAATTGAAAGGAGTAGATGATTTGTTCAAAAGCCTGGACAATAAAGCAACAACTTGGAAGTGCATTTACAGCAATGCACTTTCTAGTATGGGACTGACAACCAGTGTAAGAAAGGTGTACAACATGGTTCAAAACTTCAAGCAGAAAACTCTTCCTTCTAACCATGTGCCAACCAAAAAGAGAAGTAGAACGACCACAAGAAAATAG
>Glyma16g03151.1 sequence type=predicted peptide gene model=Glyma16g03151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high KISLGATVCTPLNPSCSSCPASEFCHALSNAKHDSTVAVTDYPVKGVKVKQRCDFSAVCVVELVGAETLDKNQSSSKFILVKRPEEGLLAGLWEFPSVLLDGEAVPLARREAMDPFLKKNLKIDIRKTCNIVLREDIGEFVHIFSHIRLKLYVELLVLQLKGGVDDLFKSLDNKATTWKCIYSNALSSMGLTTSVRKVYNMVQNFKQKTLPSNHVPTKKRSRTTTRK* >Glyma16g03151.2 sequence type=predicted peptide gene model=Glyma16g03151 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high KISLGATVCTPLNPSCSSCPASEFCHALSNAKHDSTVAVTDYPVKGVKVKQRCDFSAVCVVELVGAETLDKNQSSSKFILVKRPEEGLLAGLWEFPSVLLDGEAVPLARREAMDPFLKKNLKIDIRKTCNIVLREDIGEFVHIFSHIRLKLYVELLVLQLKGVDDLFKSLDNKATTWKCIYSNALSSMGLTTSVRKVYNMVQNFKQKTLPSNHVPTKKRSRTTTRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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