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Report for Sequence Feature Glyma16g03090

Feature Type:gene_model
Chromosome:Gm16
Start:2687013
stop:2691520
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g03090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47240AT Annotation by Michelle Graham. TAIR10: NRAMP metal ion transporter 2 | chr1:17309043-17311308 REVERSE LENGTH=530 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006875GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis SoyBaseN/AISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015103GO-mf Annotation by Michelle Graham. GO Molecular Function: inorganic anion transmembrane transporter activity SoyBaseN/AISS
GO:0046873GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity SoyBaseN/AISS
KOG1291 KOG Mn2+ and Fe2+ transporters of the NRAMP family JGI ISS
PTHR11706Panther MANGANESE TRANSPORTER JGI ISS
PTHR11706:SF8Panther NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN (NRAMP) (MANGANESE TRANSPORTER) JGI ISS
PF01566PFAM Natural resistance-associated macrophage protein JGI ISS
UniRef100_G7JQS5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Natural resistance-associated macrophage protein n=1 Tax=Medicago truncatula RepID=G7JQS5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MKM5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MKM5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g03090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g03090
ParalogEvidenceComments
Glyma07g06490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g03090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g027800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g03090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g03090
>Glyma16g03090.1   sequence type=CDS   gene model=Glyma16g03090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACTCAGTTACAACAACACAACAAAAGAGAATTCAAGGGAGAAGAAGAAGAAGAGGAGGAGGAAGAAGAAAACCATTTGCTACATTCAGAATGCGAAACAATACCATTGTCCTCACCCCACACATCACCCTCAGAGTGGGAACATGGAAACAGAGAAGAAGAAGAAGAAGAAGAAGAGAAGGACACGGTGTATGCAGCCAAGGACAAGGTGCAGATATTCGACCTGGAGTCCGCCAGTGGCGCCAGTGTGGGGTCAACGGCGGTGCCGCCATTCTCGTGGAGGAAGCTGTGGCTGTTCACCGGACCCGGGTTGTTGATGAGCGTGGCATTTTTAGACCCGGGGAACCTTGAAGGGGACCTTCAGGCTGGAGCCATTGCAGGGTACTCTTTGCTTTGGTTGTTGATGTGGTCAACCTTCATGGGGCTGGTGATACAGCTTCTGTCGGCAAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTGTGCCGGGAGGAGTACTCCAATTGGGCCAGGTTGGTGCTGTGGATCTTGGCTGAGCTTGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCTATTGCTCTCAAGATTCTTAGCCATGGGATTCTCCCCATTTGGGCTGGTGTGATCATCACAGCCATGGATTGTTTCTTCTTTCTATTTCTCGAGAACTATGGAGTGAGGAAATTAGAAGGTGTATTCGCAGTTTTCATTGGAACTATGGGCTTTTCTTTTGCGTGGATGTTCTTCGATACAAATCCCAGTGAAGAAGAACTACTGATGGGCCTTTTGATCCCAAGAGTAAATTCGAAAACGCTTCGTCAGGCTGTGGAAATTGTGGGGTGTGTGATAACCCCACACAATGTATTCCTCCATTCTGCATTAGTACAATCAAGGGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTATAAACTACTACTCAATTGAGTCATCAGTTGCACTTTTAGTAACATTGGTGATCAATCTGTTTGTGATAACCGTTTTCGCTAGGGTGTTCTACGGTACAGAACAGGCGAAAGGCATAGGATTGGTAAATGCAGGGCAGTATCTTCAGGAGAGGTATGGAGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTGTTAGCAGCTGGACAAAGTAGTACCATCACAGGCACATATGCAGGGCAGTTTATAACTGAGGGCTTTCTTAATCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCAATTGTTTTTAATACATCAGAAGGTTCTTTGGATACCATGAATGAATGGCTTAATGTGGTCCAAGCAATACAGATTCCTTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGACCTTCAGAATAGGGCCTATAGTAGAGAGAGTGGCTTGGAGTGTGGCTGTGCTGGTAATATTGGTTTATGGATATATGTTATTAGATTTCTTCCTGGATGAAGTGGATGGAGTGTTGTTTGGTTTTCTAGTCTTCCTTGGTGCTGCAGCATGGATTTCATTTATTATATATCTGGTTCAACATAGTGGTGCCATTTCTTCAATCCTAGTGAGGTCCTCTTATTCCAAAGGCTTTTTCTCTCTTGCTGGCAACTAA
Predicted protein sequences of Glyma16g03090
>Glyma16g03090.1   sequence type=predicted peptide   gene model=Glyma16g03090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTQLQQHNKREFKGEEEEEEEEEENHLLHSECETIPLSSPHTSPSEWEHGNREEEEEEEEKDTVYAAKDKVQIFDLESASGASVGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTFMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAELALIAADIQEVIGSAIALKILSHGILPIWAGVIITAMDCFFFLFLENYGVRKLEGVFAVFIGTMGFSFAWMFFDTNPSEEELLMGLLIPRVNSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYSIESSVALLVTLVINLFVITVFARVFYGTEQAKGIGLVNAGQYLQERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLNLNIKKWLRALITRSCAIVPTMICAIVFNTSEGSLDTMNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVERVAWSVAVLVILVYGYMLLDFFLDEVDGVLFGFLVFLGAAAWISFIIYLVQHSGAISSILVRSSYSKGFFSLAGN*






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