SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61670 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3133) | chr3:22819052-22821870 FORWARD LENGTH=790 | SoyBase | E_val: 5.00E-147 | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF11331 | PFAM | Protein of unknown function (DUF3133) | JGI | ISS | |
| UniRef100_I1MKL5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MKL5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6K2T0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Extra-large G-protein-like n=2 Tax=Oryza sativa RepID=Q6K2T0_ORYSJ | SoyBase | E_val: 2.00E-121 | ISS |
|
Glyma16g02990 not represented in the dataset |
Glyma16g02990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g06350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g026700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g02990.1 sequence type=CDS gene model=Glyma16g02990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACTCAACCAAGTTGCGTTTGGTGCGGTGCCCCAAGTGTCAAAATGTTCTTCCAGAGCTTGCCAATTACACTGTTTATCAATGTGGTGGTTGTAACACTGTTCTTCGAGGAAAGCCTAAAGGTTCTGAAGGTGGTGGTAGGTTGTGGCAAGCCTCAGATGAGGAACAAGGTGGGGGAGATCAAGACGCATCAGGAAGTTTCTTGAGGAAAGGGGTAGTTGATTTGAGTGATAATTCAGATGTTGATGTTAGGTCTAGTGGTGGTTCCTCCAGGGAGGGTCAAAGAAGGGATTTGAAGAAATCAAATAAAGGACATGAGAGGTTTTTGGATGATTCTAGAGATGGGGATGAGAAAGGGGTTTTGGAGGATGGTTTTAATGTCAATAAGGACAAAAGGGGTAAGTCAATTGGAAGGGAGCAGCAGGAGCAGAAGACTCACATGGGAGGGGACCAATTCTATGGGAGAATGTCTAATTTGCCAATTGGGGAAAGAGGTGAGATGGAGGGGTTTTGGAGAAAGCCACAAGCAGATATGGAGGATGTGAGATTTGCCACTCTGAATTATCCCGACGAGGGATCTTCAAATAGCTATTCCAGTTTTTCTTACAATTATGGGGAGCAATGGAGGAATTACAAGGACATGGATGGTGTCAGTAGGGTTCAGCACCTTGAGCAAGATCGAGCCGAGATTCTAAGGAAGCTGGATGAGTTGTCCAACCAGTTGAACAAGTCTTGTGAGGTGGTTAGTAACCCAAAAGAAAAGGTTCTTCCTGAGGGAAAGATGGTTCCTCCAGATCCTTTTAGTGGCCCTGAAACTCGGTTTCCAGATGGATCATCAGCGATGAACAGGTCCTCAAGACAATTCTTTGGCCCTACTAGTAATAAACATATGGCAGGTTCCCCTTATTTTAATTATCAAGATCCATATGCTTATAGAAGTGGTCATGAAATGGCTATGCACAACTTCTACCCTTCTATGCATAATCCCAATTATGTTCCTGGATATGGGGATCCTTTTGTATCTGAGATGATGAGAGGTTCACATCCTTTACCCCGTCAGTTCCCGCAACAACCAATGCACCCCTACTTTCCTGGACGCTATACTGATACTGGTCCAGATTCATATGATGCATGTGCACAGAATGCTATGCTTCACCCACCTTCTTGCCCATGTTTTCGTTGCTATGACAACAAAAGAAGAGGTCCAGTGCCGGCACCTGCTGCATTCGGTAACAGCAGATTCCCTCATACCCCAAATGATTCTATGCTATACCGTCATGAGATTCCAGGGGCAGTTGGTCCACATGTTCATAATGCTAGAACTGCCATTCCTGCTGTGAGTTTGCATGAAAAACAACTGCATACAAGATGGCCCAGAGACTACAATTCTGAGATGGGTGGATTTGTTGGAAGCCGTCCTCGAAAAGTAGTGCCTGGTAGTGGTGGTCGTCATTGCCTTCCTATAGCTGGTGGTTCTCCTTTCATCACATGTCATATTTGCTATGAGTTACTGCAACTGCCTAAAAAGACACTGGTCATGGTGAAAAATTGTCAGCAAAAAATGCGATGTGGAGCTTGTTCTTCAGAAATAAAATTTGCTGTCATCGATAAGAAGCTAGTTTTTTCTCCTCATTCACAAACAGAGGAAACTACCACATCCACGAGAGTTGATGATGCCACTAATGAGGTTGTGAATAGTCGTGTATTCCATGCCCGTGGTGATGTGAACACGGGTGCTGCAAACTTCTCGTCTGATGATTATTCTGGTTATGATTTTCATTCAGTTGATAGAGAATCTCCTGTGCTGGCTGCAGACCCAAGCTTGAACTCTACCAAGTCCCGGGAGAGGCAAAGTTTCCATTCTTCATCTCCCAGTACTTCTAATGATGAAAATAGTTCTGAGGTTATGGCTGCTCCAAGTGAAGCTCTTAAGTCCATTCATCAACCGACTAAAGCCTCTCAGTCTTCACCTGGTGGTTCATTTAATAATGCTGTAAATCGATTAGGGAAAGGAAACCAAAGTAGTCGGTCAGATCAAGAGACGGAAAAAATAGAAAAGAATGCCTCAAGGCAGAATTCTTTGAAAGAGCTAGTGCTTGCAACTGAGATGGATGTCATTGATTATTCTAACAACGGGATCTCCCAGGATTTGGGTGATGCAAGCGGAGAACATGATCATCCTAGATCTAGCAAAAGGGGTGAATCATTTTTAGCAAACATTATCAAGAAAGATAATGAAAAAAATAATGTTACTGTAAACGGACAGCCCATATCAGATTGCATGATTAAGAAGGCTGAAAAGCTAGCTGGACCAATCCAGCCTGGGAATTACTGGTATGATTCTCGAGCTGGATTTTGGGGTGTCATGGGTGGACCATGTCTTGGAATAATTCTGCCATTCATAGAAGAGTTCCGGCATCCAATGCCAGATAAATGTGCTGGTGGAAATACTGGTGTTTATGTAAATGGTAGAGAACTTCACCAAAAAGATTTAGATTTGCTTTCTCGTAGAGGACTTCCTCGTGATAGCAATAGATATTATATTGTTGAGATTTCTGGGAGAGTCCAGGACGAAGACACAGGAGAAGATCTGGACAGCCTTGGCAAACTTGCACCAACAGTGGAGAAAGAAAGGCGTGGATTTGGCATGAAAGTACCCAGAGCAGCTGCATAA
>Glyma16g02990.1 sequence type=predicted peptide gene model=Glyma16g02990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDSTKLRLVRCPKCQNVLPELANYTVYQCGGCNTVLRGKPKGSEGGGRLWQASDEEQGGGDQDASGSFLRKGVVDLSDNSDVDVRSSGGSSREGQRRDLKKSNKGHERFLDDSRDGDEKGVLEDGFNVNKDKRGKSIGREQQEQKTHMGGDQFYGRMSNLPIGERGEMEGFWRKPQADMEDVRFATLNYPDEGSSNSYSSFSYNYGEQWRNYKDMDGVSRVQHLEQDRAEILRKLDELSNQLNKSCEVVSNPKEKVLPEGKMVPPDPFSGPETRFPDGSSAMNRSSRQFFGPTSNKHMAGSPYFNYQDPYAYRSGHEMAMHNFYPSMHNPNYVPGYGDPFVSEMMRGSHPLPRQFPQQPMHPYFPGRYTDTGPDSYDACAQNAMLHPPSCPCFRCYDNKRRGPVPAPAAFGNSRFPHTPNDSMLYRHEIPGAVGPHVHNARTAIPAVSLHEKQLHTRWPRDYNSEMGGFVGSRPRKVVPGSGGRHCLPIAGGSPFITCHICYELLQLPKKTLVMVKNCQQKMRCGACSSEIKFAVIDKKLVFSPHSQTEETTTSTRVDDATNEVVNSRVFHARGDVNTGAANFSSDDYSGYDFHSVDRESPVLAADPSLNSTKSRERQSFHSSSPSTSNDENSSEVMAAPSEALKSIHQPTKASQSSPGGSFNNAVNRLGKGNQSSRSDQETEKIEKNASRQNSLKELVLATEMDVIDYSNNGISQDLGDASGEHDHPRSSKRGESFLANIIKKDNEKNNVTVNGQPISDCMIKKAEKLAGPIQPGNYWYDSRAGFWGVMGGPCLGIILPFIEEFRHPMPDKCAGGNTGVYVNGRELHQKDLDLLSRRGLPRDSNRYYIVEISGRVQDEDTGEDLDSLGKLAPTVEKERRGFGMKVPRAAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
