Glyma16g02960 - SoyBase

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Report for Sequence Feature Glyma16g02960

Feature Type:	gene_model
Chromosome:	Gm16
Start:	2538810
stop:	2542188
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46400	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 46 \| chr2:19043676-19044754 REVERSE LENGTH=295	SoyBase	E_val: 5.00E-47	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B0LUS6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUS6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MKL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKL2_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma16g02960

Locus	Gene Symbol	Protein Name
	WRKY60	WRKY Transcription Factor

Expression Patterns of Glyma16g02960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02960

Paralog	Evidence	Comments
Glyma07g06320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g026400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g02960

Limit To All Plant Sequences

>Glyma16g02960.1   sequence type=CDS   gene model=Glyma16g02960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAATATGAAGTGTGAACTAGTTGGTCTCATTGATGAGTTAATGCAAGGGAAGGAGCTAGCAAAGCAGCTTTGTGACCATCTAGTCTCATTATCATCATCATCTTCTCATGAAACAAATGAAGTCCTAATTGAGAAAATACTTTCCACCTATGAGAAAGCACTTGCCATGCTGAATTGCAAGGCTAATGTAGGAGAAAGTAAGGCCAACATTAATGGCAGCATGATGGATTCCCCTTGTTCTTTCACAAATGGTAGCCCCAAAAGTGAGGTCATGGAGCCTGAGATTAAGAACAAAGATGTCTTTAAGAAAAGAAAGACCATGTCAACGTGCACAGAACAAGTGAAGGTGTGCTTGGGAACGGCGCATGAAGGATCTCTGGATGATGGCTATAGTTGGAGAAAATATGGACAGAAGGATATTCTCGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACATATAGAAATGTACAAGGATGTCTGGCCACAAAGCAGGTGCAAAAGTCAGATGAAGACCCAATGATATGTGAAATAACCTACAAAGGAAGACACACATGCACCCAAGCAAGTCACTTAAACAAAACAGTGATACCCCCATCAAAGACAAAGGTGAACTTGTTGGGAGAAAATAAGCACCAAACCCATCAAATTAAGAATCAACCACGGCAAGAGAAAATAGAACAACAACCACCAGAGACATTTTTCACATTTGGATCATCATCAGGTCTTGAAGTTAAAATAGAGGACATCGACCACAAGGAGGGCATATTCCCATCATTTTGCTTTTCTTCTCCATCAATAGTAGGGTCAGAAAATGGGGACGACAACAACAGCAGCATATTCTCATACACCATGATTGAGAACAACTTAATGGAAAGCTTCTCTCCTGCCTTCATATCTCCAACAACTTCAGATATAGAATCAAACACTTTCTGCCACTGGGGGAGCACTGGACTAGGCCAAAGTGTGCAAAGCTCAGGGTCTGATATCACTGATATAGTTTCAGCACCAACTTCAGTCACCAATTCACCAATAATGGACCTTGATTTCTTTTTCGATAAGATCGATTTCGACACAGATTTCCCTTTGAGCACCATGGAACTTTGCACTTAA

Predicted protein sequences of Glyma16g02960

Limit To All Plant Sequences

>Glyma16g02960.1   sequence type=predicted peptide   gene model=Glyma16g02960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEENMKCELVGLIDELMQGKELAKQLCDHLVSLSSSSSHETNEVLIEKILSTYEKALAMLNCKANVGESKANINGSMMDSPCSFTNGSPKSEVMEPEIKNKDVFKKRKTMSTCTEQVKVCLGTAHEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTYRNVQGCLATKQVQKSDEDPMICEITYKGRHTCTQASHLNKTVIPPSKTKVNLLGENKHQTHQIKNQPRQEKIEQQPPETFFTFGSSSGLEVKIEDIDHKEGIFPSFCFSSPSIVGSENGDDNNSSIFSYTMIENNLMESFSPAFISPTTSDIESNTFCHWGSTGLGQSVQSSGSDITDIVSAPTSVTNSPIMDLDFFFDKIDFDTDFPLSTMELCT*

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