Glyma16g02920 - SoyBase

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Report for Sequence Feature Glyma16g02920

Feature Type:	gene_model
Chromosome:	Gm16
Start:	2509285
stop:	2512020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01030	AT	Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein \| chr4:448336-450642 REVERSE LENGTH=768	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G8A087	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G8A087_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BA85	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BA85 related cluster n=1 Tax=unknown RepID=UPI000233BA85	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g02920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02920

Paralog	Evidence	Comments
Glyma07g06281	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g026000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g02920

Limit To All Plant Sequences

>Glyma16g02920.2   sequence type=CDS   gene model=Glyma16g02920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCCAAGAAGCCATTCACCCTCTTCAATTTCTCTTGGAATGTCAGAAGCTCAGCTTGTTTCTTCTCCTCAATTTTCCCCACCAAAATTTTCTCCATTCTTTCACCCTTTTGGTGAGATAAGAACCTTGAATTCTGTGAGGGAATTGCATGCCCAGATTATCAAAATGCCAAAAAAGAGGAACTTGGTTACAATGGATGGAAGCATGATGAGAAACTACTTGCAATTTGGAGACTTTGAGTCAGCAACAAAGGTATTTTTTGTGGGTTTTGCAAGGAACTACCTTCTATGGAACTCTTTTATTGAGGAGTTTGCAAGTTTTGGAGGTGATTCACATGAGATTCTGGCGGTCTTCAAGGAATTGCATGATAAAGGAGTGAAATTTGACAGTAAAGCTCTCACTGTTGTTCTGAAAATTTGTCTGGCTTTAATGGAGTTGTGGCTTGGGATGGAAGTTCATGCTTGTCTGGTTAAGAGAGGCTTCCATGTTGATGTACACTTGAGTTGTGCATTGATCAATCTCTATGAGAAATATTTGGGAATAGATGGGGCAAATCAAGTTTTTGATGAGACCCCACTACAAGAAGATTTCTTGTGGAATACAATTGTTATGGCAAACTTGAGGAGTGAGAAGTGGGAGGATGCCTTGGAACTGTTCCGTCGAATGCAATCGGCTTCTGCCAAAGCCACTGATGGCACTATTGTCAAGCTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGTTATAAGATTCGGAAGAGTGTCAAATACTTCAATTTGCAACTCTATAGTTAGCATGTACTCTAGGAACAATAGACTTGAACTAGCTAGGGTAGCTTTTGATTCAACTGAGGATCATAACTCGGCATCATGGAACTCGATAATTTCGAGTTATGCAGTCAATGACTGTTTGAATGGTGCCTGGGATCTCCTCCAAGAAATGGAATCTTCCGGCGGGTCATATGAAAATGTTCTCACCAATTTCCGGAGCCTGCAAAGCGCAGGCTTCAAGCCAGATTCATGTTCAATAACTAGTGCTCTACAAGCAGTCATTGGATTGGGTTGCTTTAATTTAGGGAAAGAAATCCATGGTTACATAATGAGAAGTAAGCTTGAGTATGATGTCTACGTTTGTACTTCTTTGGTGGATAAGTATATTAAGAACGATTGCTTAGATAAAGCTGAAGTAGTGTTCCATCATACAAAAAACAAAAATATTTGTGCCTGGAATTCATTGATATCTGGTTACACCTACAAGGGTTTGTTTGACAATGCTGAAAAGCTACTCAACCAGATGAAGGAGGAAGGAATAAAACCTGATTTGGTGACATGGAATAGTTTAGTTTCAGGTTATTCAATGAGCGGCCGCAGTGAGGAAGCATTGGCTGTGATCAATCGGATCAAGAGTTTGGGATTAACTCCTAATGTGGTGTCCTGGACTGCTATGATATCAGGCTGTTGTCAAAATGAGAACTACATGGATGCCCTACAGTTTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACTCTACTACCATTTGCACACTTCTCCGGGCATGTGCAGGCTCATCACTGTTAAAGATAGGTGAAGAGATACACTGCTTCAGTATGAGACATGGGTTTCTGGATGACATATATATAGCCACAGCCCTCATTGACATGTATGGTAAGGGAGGAAAACTTAAAGTAGCCCATGAGGTTTTCAGGAATATTAAGGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGATACGCTATTTATGGCCATGGGGAAGAGGTATTTACTCTATTTGACGAAATGCGCAAAACTGGTGTTAGACCTGATGCTATAACCTTCACAGCTCTTCTATCTGGCTGCAAGAATTCAGGTTTAGTTATGGATGGGTGGAAGTACTTTGACAGCATGAAGACAGATTACAATATTAATCCAACAATTGAGCACTACTCTTGCATGGTAGATCTTCTTGGAAAAGCTGGCTTTCTTGATGAAGCTTTGGATTTCATTCATGCCGTGCCACAAAAGGCAGATGCTAGTATTTGGGGTGCTGTTCTTGCAGCCTGCAGACTTCACAAAGACATTAAGATAGCGGAGATTGCCGCTAGGAATCTCTTAAGGTTGGAGCCATATAATTCTGCTAACTATGCGTTGATGATGAACATATATTCCACTTTTGACAGATGGGGGGACGTGGAGCGCCTTAAAGAGTCAATGACTGCCTTGGGGGTGAAAATCCCAAATGTTTGGAGTTGGATACAAGTTAAGCAGACTATTCATGTGTTCTCCACAGAAGGGAAATCACATCCAGAAGAAGGAGAAATATATTTTGAGCTGTATCAATTAATCTCAGAGATAAAAAAGCTGGGGTATGTACTTGATATTAATTGTGTGCATCAGAACATTGATGACAGTGAGAAGGAGAAGGTTCTGCTCAGTCACACAGAGAAGTTGGCTATGACATATGGACTGATGAAAACTAAAGGAGGGTCACCAATCAGGGTGGTGAAGAACACAAGAATTTGTCATGACTGTCACACAACAGCTAAGTACATTTCCTTGGCTCGAAACCGCGAGATTTTCCTCAGAGATGGTGGCCGTTTTCACCATTTCATGAATGGAGAATGCTCCTGCAAAGATCGCTGGTAA

Predicted protein sequences of Glyma16g02920

Limit To All Plant Sequences

>Glyma16g02920.2   sequence type=predicted peptide   gene model=Glyma16g02920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPRSHSPSSISLGMSEAQLVSSPQFSPPKFSPFFHPFGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFMNGECSCKDRW*

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