SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22190 | AT | Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:9433897-9436482 REVERSE LENGTH=354 | SoyBase | E_val: 3.00E-102 | ISS |
| GO:0005992 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004805 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity | SoyBase | N/A | ISS |
| PTHR10788 | Panther | TREHALOSE-6-PHOSPHATE SYNTHASE | JGI | ISS | |
| PF02358 | PFAM | Trehalose-phosphatase | JGI | ISS | |
| UniRef100_G8A085 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Trehalose-phosphate phosphatase n=1 Tax=Medicago truncatula RepID=G8A085_MEDTR | SoyBase | E_val: 6.00E-124 | ISS |
| UniRef100_UPI000233BA82 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BA82 related cluster n=1 Tax=unknown RepID=UPI000233BA82 | SoyBase | E_val: 0 | ISS |
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Glyma16g02870 not represented in the dataset |
Glyma16g02870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g025600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g02870.2 sequence type=CDS gene model=Glyma16g02870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATTGCTGAAGGGAAACAAATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCGATTGTAGATGACCCTGACAAGGCTTACATGAGTGATGTTATGCGTGCAGCTGTATGTGAAGTTGCCAATTGTTTTCCCACTGCCATTGTTAGTGGAAGGAGCAAGGATAAGGTATATGAATTTGTGAAGTTAGAGAATGTTTACTATGCTGGAAGTCATGGTATGGACATATCAACACCATCAGGCTCTTCAAAATATGAAGAGCAGGAGCATCAGATAAAGGCTGTTGATGAAAAGGGTAATCCCGTTGTTCACTGTCATCCGGCAATAGAATTTTTGCCAACAATCCAAGAGATAGTTAAGGTTTTGAAAGAAAATACAAGAAGAATAAAGGGCTCTATGATTGAGGATAATACATTCTGTGTCACTGTACACTACCGGTGTGTGAAAAATGAAGAGGAAGTTGGTGTTCTCAAAAAAATGGTGAAGACTATTATGAAAGCTTACCCCGATTTTTACATATCAGGAGGAAGAAAGGTTATGGAGATACGTCCAACTGTAAACTGGGACAAAGGTCGTGCTCTTACATATTTGCTTGACACTCTTGGCTTTGACAACTTCAGCAATGTTCTTCCAATGTACCTTGGGGATGATAGAACAGATGAAGATGCTTTTAAGGTTATAAGACACATTGGATGTGGTTTTCCCATTGTTGTTTCTTCAATTGCAAAGGAGACTGAGGCTTCATATTCCCTGCGTGACCCTGCTGATGTGCTGACTTTCTTGATTCGTTTAGCAAAACGTAAGAAGAACGAACTTGTTACAGAAAATTGA
>Glyma16g02870.2 sequence type=predicted peptide gene model=Glyma16g02870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIAEGKQIVVFLDYDGTLSPIVDDPDKAYMSDVMRAAVCEVANCFPTAIVSGRSKDKVYEFVKLENVYYAGSHGMDISTPSGSSKYEEQEHQIKAVDEKGNPVVHCHPAIEFLPTIQEIVKVLKENTRRIKGSMIEDNTFCVTVHYRCVKNEEEVGVLKKMVKTIMKAYPDFYISGGRKVMEIRPTVNWDKGRALTYLLDTLGFDNFSNVLPMYLGDDRTDEDAFKVIRHIGCGFPIVVSSIAKETEASYSLRDPADVLTFLIRLAKRKKNELVTEN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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