Glyma16g02853 - SoyBase

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Report for Sequence Feature Glyma16g02853

Feature Type:	gene_model
Chromosome:	Gm16
Start:	2420947
stop:	2428646
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02853

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01010	AT	Annotation by Michelle Graham. TAIR10: cyclic nucleotide-gated channel 13 \| chr4:434569-437242 REVERSE LENGTH=696	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006811	GO-bp	Annotation by Michelle Graham. GO Biological Process: ion transport	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF7	Panther	POTASSIUM CHANNEL PROTEIN EAG-RELATED	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
PF00520	PFAM	Ion transport protein	JGI		ISS
UniRef100_G7L436	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated channel C n=1 Tax=Medicago truncatula RepID=G7L436_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BA81	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BA81 related cluster n=1 Tax=unknown RepID=UPI000233BA81	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g02853

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g02853 not represented in the dataset	Glyma16g02853 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02853

Paralog	Evidence	Comments
Glyma07g06220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02853 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g025400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02853

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g02853

Limit To All Plant Sequences

>Glyma16g02853.2   sequence type=transcript   gene model=Glyma16g02853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTCTTAAGTGCGTGACCATAAAAATTCTTTCTCTGAAGGCTTAGTGCAACACTGCAACATTTTTTTTTTGCTTTGTTTTAGTTTTGAACTCCTCTGCTTCATGCTTTGGTTCTCGGGGTAAGTAAAGGAAACAGAGAAGGGACTTCACACTTATCAAGAAACCTTGGCATAGCTAAGATTGATGTTCCTTTAACCTTCTAATCTTGGCCATCTTCTCTTACCTTCTTACCAACAACTTGAACACATCAAGGCCTGAATCTTCTATTGTCCAAGTAAAGTGTGCTTTTCTATAAAGCATAAATATTCTCACTGGATACGGAAGTAGCTTAATCATGACTGCAAAGGAAAAGAAATTTGTGAGGTTGGATTGGAAGTCACTTTCTTCTTCAAGTATTGAGCACAATGATTCTTCTAATGATGGATTTCTCAAAAGAAAAGTTCGACCAAGCTTAAGTTCTCTCATTGATGGATCAATAACAAATTCGTCTTGTCAGAGCCATGTTCTTGATCCACAGGGGGCAACACTTCAGAAGTGGAACAAAATTTTTGTAATTACAAGTGTGATGGCAGTCTCTGTGGACCCTCTTTTCTTTTACATCCCAATGATTGATGACAAGAAACAATGCCTTGCTTTGGATGGAACACTGAAGATTACTGCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCTCGTGTACTTGGAAGGGGTGAGCTAGTTAATGATCCTTGGGCCATAGTAATGAGATACTTAAGCTCTTACTTCATCATTGATATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTACGGTCTCAATTCCAAAATGCTCAGTTCCTTATGTGGGAAAGGATTTATTGAAGTACACAATAATAACCCAGTACGTGCCAAGACTTCTGCGGATTTACCCGTTATTCAAAGAAGTAACAAGAACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTTCAATCTTTTTCTGTATATGCTAGCAAGTCATGTTGTTGGAGCATTCTGGTATCTATTTTCGGTTGAATCAAGGTTGCGGTGCTGGCGAAGGCAGTTGAAGACTACTATGATCTTTCATGAATCCTACCTTAGCTGTGGACGTAACAATCCCATTGTTCTATCGCTTCTCAAATATTCTTGCCCTTACATTGATCCAGAAAGCATAGAAAACCTGGCAACTTTCAATTTTGGAATGTTTGTAGAGGCTCTAAAGTCTCGCGTGGTGGAATCAACTACAGATTTTACTCACAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTCTCGAGACAAGTAGTTATGTTGGGGAGATAATCTTTGCTATCTTAATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGCAAACATGCAGAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCAGATTTGCTGAAGGAAAGAATTAGAAGGTATGAGCAATACAAATGGCAAGAAAATAAGGGTGCTGAAGAGGAGACATTGATTCGCAACCTCCCTAAAGATCTCAGAAGGGATATCAAGCGTCATCTTTGCTTAGAACTACTTAGAAAAGTACCAATGTTTGAGGACATGGATAATCAGTTGTTGGATGCACTGTGTGACAGACTGAAGCCAGTTCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATAATGCGGGGAAAACTAGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCATTGGACCCCAACTCATCCTCAAATCTACCCATTTCAACTAGAACTGTGCAAACTATATCAACAGTTGAAGCCTTTGCTCTCATGTCTGATGACTTGATGTTTGTTGCTTCCCAATTTCGACGGCTTTTAAACAGCAAACAACTTCAGCACACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGCTGCACGCTTCTTACAAGCAGCTTGGCGCAGATACCGAAAAAGGAAGGAGAGCACGACACATCGTTCATTCACTGATCTCTCGTACAGGTTCTATTCCCCGCGATGGAGGAAATGGGCAGCATGTTTCATTCAAGCATCTTGGCGCAGATACAAGAAAAAGTAGGCTGAGAGGTTATCACGTGAAGAAGCAGAAGAAAGGATAAAAGCTTTGGAAAATGATGAAGGGTCCTCACCTAGCTTTGTTGCCACCGTATATACAGCTAAGTTTGCATCAAATGCATTGCGCCACTTGCCAAGTGGTAAACGTAATAACAGAGTGCCAAAGCCACGGAGATTGCTACCCCTTATGCCTCAGAAGCCTGCTGAACCAGATTTCACTGCTCAGAAAAATCACTGATCAACCCTAGTTTTAAGTAAATTAATTGCAAGTTTATAACACTGAACTTGAAAATTTTCACATCTCCTTAGCAATTGTTTGTGCATAAGTTACTGCGTAAAAAAGTGGTGATTTCAGGATTCCCACGACTGTGCATATATATGTAGACACGGCAGTGTGTAAAAATATAATAATTGGTTGTTTGGATGAATGGTTTCGAAACATATTTTCACGAGAAGAGCTTCTCGGTGCTCAAATTAAGCCAAGTTTGGA

Coding sequences of Glyma16g02853

Limit To All Plant Sequences

>Glyma16g02853.1   sequence type=CDS   gene model=Glyma16g02853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCAAAGGAAAAGAAATTTGTGAGGTTGGATTGGAAGTCACTTTCTTCTTCAAGTATTGAGCACAATGATTCTTCTAATGATGGATTTCTCAAAAGAAAAGTTCGACCAAGCTTAAGTTCTCTCATTGATGGATCAATAACAAATTCGTCTTGTCAGAGCCATGTTCTTGATCCACAGGGGGCAACACTTCAGAAGTGGAACAAAATTTTTGTAATTACAAGTGTGATGGCAGTCTCTGTGGACCCTCTTTTCTTTTACATCCCAATGATTGATGACAAGAAACAATGCCTTGCTTTGGATGGAACACTGAAGATTACTGCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCTCGTGTACTTGGAAGGGGTGAGCTAGTTAATGATCCTTGGGCCATAGTAATGAGATACTTAAGCTCTTACTTCATCATTGATATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTACGGTCTCAATTCCAAAATGCTCAGTTCCTTATGTGGGAAAGGATTTATTGAAGTACACAATAATAACCCAGTACGTGCCAAGACTTCTGCGGATTTACCCGTTATTCAAAGAAGTAACAAGAACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTTCAATCTTTTTCTGTATATGCTAGCAAGTCATGTTGTTGGAGCATTCTGGTATCTATTTTCGGTTGAATCAAGGTTGCGGTGCTGGCGAAGGCAGTTGAAGACTACTATGATCTTTCATGAATCCTACCTTAGCTGTGGACGTAACAATCCCATTGTTCTATCGCTTCTCAAATATTCTTGCCCTTACATTGATCCAGAAAGCATAGAAAACCTGGCAACTTTCAATTTTGGAATGTTTGTAGAGGCTCTAAAGTCTCGCGTGGTGGAATCAACTACAGATTTTACTCACAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTCTCGAGACAAGTAGTTATGTTGGGGAGATAATCTTTGCTATCTTAATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGCAAACATGCAGAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCAGATTTGCTGAAGGAAAGAATTAGAAGGTATGAGCAATACAAATGGCAAGAAAATAAGGGTGCTGAAGAGGAGACATTGATTCGCAACCTCCCTAAAGATCTCAGAAGGGATATCAAGCGTCATCTTTGCTTAGAACTACTTAGAAAAGTACCAATGTTTGAGGACATGGATAATCAGTTGTTGGATGCACTGTGTGACAGACTGAAGCCAGTTCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATAATGCGGGGAAAACTAGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCATTGGACCCCAACTCATCCTCAAATCTACCCATTTCAACTAGAACTGTGCAAACTATATCAACAGTTGAAGCCTTTGCTCTCATGTCTGATGACTTGATGTTTGTTGCTTCCCAATTTCGACGGCTTTTAAACAGCAAACAACTTCAGCACACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGCTGCACGCTTCTTACAAGCAGCTTGGCGCAGATACCGAAAAAGGAAGGAGAGCACGACACATCGTTCATTCACTGATCTCTCGTACAGGTTCTATTCCCCGCGATGGAGGAAATGGGCAGCATGTTTCATTCAAGCATCTTGGCGCAGATACAAGAAAAAGTAG

>Glyma16g02853.2   sequence type=CDS   gene model=Glyma16g02853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCAAAGGAAAAGAAATTTGTGAGGTTGGATTGGAAGTCACTTTCTTCTTCAAGTATTGAGCACAATGATTCTTCTAATGATGGATTTCTCAAAAGAAAAGTTCGACCAAGCTTAAGTTCTCTCATTGATGGATCAATAACAAATTCGTCTTGTCAGAGCCATGTTCTTGATCCACAGGGGGCAACACTTCAGAAGTGGAACAAAATTTTTGTAATTACAAGTGTGATGGCAGTCTCTGTGGACCCTCTTTTCTTTTACATCCCAATGATTGATGACAAGAAACAATGCCTTGCTTTGGATGGAACACTGAAGATTACTGCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCTCGTGTACTTGGAAGGGGTGAGCTAGTTAATGATCCTTGGGCCATAGTAATGAGATACTTAAGCTCTTACTTCATCATTGATATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTACGGTCTCAATTCCAAAATGCTCAGTTCCTTATGTGGGAAAGGATTTATTGAAGTACACAATAATAACCCAGTACGTGCCAAGACTTCTGCGGATTTACCCGTTATTCAAAGAAGTAACAAGAACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTTCAATCTTTTTCTGTATATGCTAGCAAGTCATGTTGTTGGAGCATTCTGGTATCTATTTTCGGTTGAATCAAGGTTGCGGTGCTGGCGAAGGCAGTTGAAGACTACTATGATCTTTCATGAATCCTACCTTAGCTGTGGACGTAACAATCCCATTGTTCTATCGCTTCTCAAATATTCTTGCCCTTACATTGATCCAGAAAGCATAGAAAACCTGGCAACTTTCAATTTTGGAATGTTTGTAGAGGCTCTAAAGTCTCGCGTGGTGGAATCAACTACAGATTTTACTCACAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTCTCGAGACAAGTAGTTATGTTGGGGAGATAATCTTTGCTATCTTAATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGCAAACATGCAGAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCAGATTTGCTGAAGGAAAGAATTAGAAGGTATGAGCAATACAAATGGCAAGAAAATAAGGGTGCTGAAGAGGAGACATTGATTCGCAACCTCCCTAAAGATCTCAGAAGGGATATCAAGCGTCATCTTTGCTTAGAACTACTTAGAAAAGTACCAATGTTTGAGGACATGGATAATCAGTTGTTGGATGCACTGTGTGACAGACTGAAGCCAGTTCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATAATGCGGGGAAAACTAGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCATTGGACCCCAACTCATCCTCAAATCTACCCATTTCAACTAGAACTGTGCAAACTATATCAACAGTTGAAGCCTTTGCTCTCATGTCTGATGACTTGATGTTTGTTGCTTCCCAATTTCGACGGCTTTTAAACAGCAAACAACTTCAGCACACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGCTGCACGCTTCTTACAAGCAGCTTGGCGCAGATACCGAAAAAGGAAGGAGAGCACGACACATCGTTCATTCACTGATCTCTCGTACAGGTTCTATTCCCCGCGATGGAGGAAATGGGCAGCATGTTTCATTCAAGCATCTTGGCGCAGATACAAGAAAAAGTAG

Predicted protein sequences of Glyma16g02853

Limit To All Plant Sequences

>Glyma16g02853.1   sequence type=predicted peptide   gene model=Glyma16g02853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTAKEKKFVRLDWKSLSSSSIEHNDSSNDGFLKRKVRPSLSSLIDGSITNSSCQSHVLDPQGATLQKWNKIFVITSVMAVSVDPLFFYIPMIDDKKQCLALDGTLKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVLGRGELVNDPWAIVMRYLSSYFIIDILSIIPLPQMVILATVSIPKCSVPYVGKDLLKYTIITQYVPRLLRIYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSVESRLRCWRRQLKTTMIFHESYLSCGRNNPIVLSLLKYSCPYIDPESIENLATFNFGMFVEALKSRVVESTTDFTHKFFYCFWWGLRSVSSVGQGLETSSYVGEIIFAILIAVFGLVLFASLIANMQKYLQSTSVRVEEMRVKRRDAELWMSHRMLPDLLKERIRRYEQYKWQENKGAEEETLIRNLPKDLRRDIKRHLCLELLRKVPMFEDMDNQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSFEIKAGDFCGEELLTWALDPNSSSNLPISTRTVQTISTVEAFALMSDDLMFVASQFRRLLNSKQLQHTFRFYSLQWRTWAARFLQAAWRRYRKRKESTTHRSFTDLSYRFYSPRWRKWAACFIQASWRRYKKK*

>Glyma16g02853.2   sequence type=predicted peptide   gene model=Glyma16g02853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTAKEKKFVRLDWKSLSSSSIEHNDSSNDGFLKRKVRPSLSSLIDGSITNSSCQSHVLDPQGATLQKWNKIFVITSVMAVSVDPLFFYIPMIDDKKQCLALDGTLKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVLGRGELVNDPWAIVMRYLSSYFIIDILSIIPLPQMVILATVSIPKCSVPYVGKDLLKYTIITQYVPRLLRIYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSVESRLRCWRRQLKTTMIFHESYLSCGRNNPIVLSLLKYSCPYIDPESIENLATFNFGMFVEALKSRVVESTTDFTHKFFYCFWWGLRSVSSVGQGLETSSYVGEIIFAILIAVFGLVLFASLIANMQKYLQSTSVRVEEMRVKRRDAELWMSHRMLPDLLKERIRRYEQYKWQENKGAEEETLIRNLPKDLRRDIKRHLCLELLRKVPMFEDMDNQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSFEIKAGDFCGEELLTWALDPNSSSNLPISTRTVQTISTVEAFALMSDDLMFVASQFRRLLNSKQLQHTFRFYSLQWRTWAARFLQAAWRRYRKRKESTTHRSFTDLSYRFYSPRWRKWAACFIQASWRRYKKK*

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