SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46580 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxamine 5'-phosphate oxidase family protein | chr2:19129409-19130513 REVERSE LENGTH=198 | SoyBase | E_val: 8.00E-91 | ISS |
| GO:0008615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridoxine biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0004733 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxamine-phosphate oxidase activity | SoyBase | N/A | ISS |
| GO:0010181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG4558 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR10851 | Panther | PYRIDOXAMINE 5'-PHOSPHATE OXIDASE | JGI | ISS | |
| PF01243 | PFAM | Pyridoxamine 5'-phosphate oxidase | JGI | ISS | |
| UniRef100_I1MKH2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKH2_SOYBN | SoyBase | E_val: 1.00E-141 | ISS |
| UniRef100_Q2JQ23 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JQ23_SYNJB | SoyBase | E_val: 1.00E-33 | ISS |
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Glyma16g02580 not represented in the dataset |
Glyma16g02580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g023100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g02580.2 sequence type=transcript gene model=Glyma16g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAAAAGAAAGTTTTTACAGTCCATGTGATCCTATTTGCCTCGAAACAAAGTAATGGGGAGCTTGGCGTGGAAGCAGCTTCTTCTCAACGCTCTGGAATCCAACGCTCACCTCAAGCACTCTTCTTTCATGCAGCTCGCAACCCTAGGAACCAACGGAACACCTTCCAACCGCACTGTCGTCTTCCGAGGATTCCAAGACAACACTGATAACATCCAAATTAACACCCATGCCCGCACTCCCAAGCTTTGCTCCTCTGCCGAGATATGTTGGTATTTCACAGATTCCTGGGAGCAATTTCGGATAAATGGGGATGTAGATATCATTGATGGTTTGAATCCTGATCCGCTAAAACTTCAGCAAAGAGAAAAATCCTGGTTTGCCAGTTCATTGAGATCAAGATTGCAATATTTGTTGCCCAACCCTGGACTTCCCTGTCTAAATGAGCAAGCACTGCCAGAAATATCATTAGATCCTTCTATAGGTCCAGTTGATGCTTTTTGTCTACTAATCCTAGAGCCAAATCAGGTTGATTACTTGAATCTGAAGAGTAACCAGAGGCTAACTTTCAAATCAAGTGTGAGTGATGCAGCAAAGAAAAGCTGGATTGTGGAGAGGGTCAACCCATAATCTGCTCTCTGTCAGTGCCATGTTCAGATATCACTGTAAACAATAAATTGCATGTTATAAAAGTATATTAGAGGATTGACTATGACTTAAAATGTTTTAGATATTCATTTTGTAATGGTTACTAGATTAGTTTTTGTGCTTCCCCTTGAGGGTTGTGCTTCTTCAATATAAACCGAGTAAGATTGGATGTGATATAGCCTCGTGTAAAGCAACTTATCTATCTGGACACCTCACTGGGAATTTGTATAGAGGTGGAACCTGGGAGAGAACTGGAGTCACTTTTTATCAATTTCATTTCCATTAATATTATATATTTTAGTTAATTTCAGAATACTGATGGATTAGCAGATATAAATGAAACTATAGAGAAATAGTTGCTTATTTTTGTCAGCTTTCGAATAGAAATTTTGAAAAATATCCGATTATTTCTCCAAATTTAATCTTTACCAAACATGCTATAGTCTTTTGGCTTTTTACATCCATAGTTTTTAAAAGAAATGCCAATGCTTCATTTTACAGTAACAAACATGGAGCTAAAGAACACTTGAACTGGAAGGTCTCAAAATCATCTGCTAGGTCTATTTGTTATGATCTACTGTGATCCGTTGGCAGTCTTAACATTGTGGCAGGTCTGGTGGAGGATGTGGTAAGGATTCCAGCTCTCCTTTTCCATTATTCACTATAAATACCATTCCTAGTCCCCATGACTTGTGTATGTCAAGGCGGCAGTGCATATACCACACCCCTGCAAAAACATTTCATGTTATGTTGATAGTAATAGAATAAATCTATTATTCAATTGATAAAGAGGGAGAGAGAGAAATCAATAATTCCTTGCAGTTGCAATAAAACAATAGAGAAATTAAATACAGCACTAGGGTCTCTACCTGGATTATCAGAAACAAAGCAAATTGCTGCCCATCCAGCCGATGGAACTCCAATTGTGTTCATGTATGGAGGAACCACTAAATTGAATTTTGCAGTTCATGGGCTATAGTTTCCTGTGCCATACCCTACCACATAAAAGCTATAGCCATGGAAGTGCATTGGGTGGTTTTCGGTTGCAGAATGACTTGTACCCTGCTACTATATTTAAGGACCTTTGTTCTAGTACCATTCAATGACTGTGTGTCGTGGAATGTTATTTGGGGCACCATTAACAAAGTCAGAGAAAAAGGAATGCAGAAAGATTTATCACAATTACTTTGTTAGTTATCTTTTGTTATCTCAAATACCATTAGTGGAGCAGTTGTAGTTGGGTCCTGGATGATCGGTAATGGTATATGCATCTGCTACAGGAGGAGGTCCTCCACTTGCTATAGTGGCATTCTCAACTTGTTGGAGATCCTGCAGCCAATATTCCCCTGCTATAATGCAAATCAACCCACAAACAAAAGCATTATATGAAAAACTTATTATTAATAAGTAATGCTCTAAACTCAAAACCAAAGGGAGCTGGTACCAAGTTACCTAGTATAATTATGTGCTCCTGATAGGGAAACTTAATGGGTATGGTACTCCTGTCTTTGGATACACAATCATGGCACCATAAACTATTCCTCTTATCCAAGAAACATGAGCTTGCCAGAAGAAGGTGCCCTTCTGCTGCACCACTGTAAAATTATAGGTGAAACTCAGGCTTGAAAATAGAGGGCACACATGCCTATCACAAGGCACGCTTTGCTGTTGCAAACATGCTATAATGAAAGAAGTGACTTTCCTGCTGAAGTACAGAACACATTATCCTATGAGAATGGACTTTGCATGAAAAATGGACATTCATTTAATGCAAACATTAAATGTTCCAACGGACTCAAAAATATCCTACAAAAAACAGAGTGGAGAATCCATCCGTTGAGAGACAACAAATACTTAGAGATGAAGATTATATATTAAAGGGCATATTCTTTTTGTTATGAGTGCATAATCTGTAAAAATTAAGGACACTACTTAAATGTTATATTAGATCGTCTCATTAGTGCATCGTCCGGAAATTTTTAGACGTACAAAGACAGATCATGATTTGATAGCATATCATGCACAATTTTTATTGTTTGTATTTATTTGCATCTAATCAAAAT
>Glyma16g02580.1 sequence type=CDS gene model=Glyma16g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGCTTGGCGTGGAAGCAGCTTCTTCTCAACGCTCTGGAATCCAACGCTCACCTCAAGCACTCTTCTTTCATGCAGCTCGCAACCCTAGGAACCAACGGAACACCTTCCAACCGCACTGTCGTCTTCCGAGGATTCCAAGACAACACTGATAACATCCAAATTAACACCCATGCCCGCACTCCCAAGATTGAAGAGCTCAAGCTTTGCTCCTCTGCCGAGATATGTTGGTATTTCACAGATTCCTGGGAGCAATTTCGGATAAATGGGGATGTAGATATCATTGATGGTTTGAATCCTGATCCGCTAAAACTTCAGCAAAGAGAAAAATCCTGGTTTGCCAGTTCATTGAGATCAAGATTGCAATATTTGTTGCCCAACCCTGGACTTCCCTGTCTAAATGAGCAAGCACTGCCAGAAATATCATTAGATCCTTCTATAGGTCCAGTTGATGCTTTTTGTCTACTAATCCTAGAGCCAAATCAGGTTGATTACTTGAATCTGAAGAGTAACCAGAGGCTAACTTTCAAATCAAGTGTGAGTGATGCAGCAAAGAAAAGCTGGATTGTGGAGAGGGTCAACCCATAA >Glyma16g02580.2 sequence type=CDS gene model=Glyma16g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGCTTGGCGTGGAAGCAGCTTCTTCTCAACGCTCTGGAATCCAACGCTCACCTCAAGCACTCTTCTTTCATGCAGCTCGCAACCCTAGGAACCAACGGAACACCTTCCAACCGCACTGTCGTCTTCCGAGGATTCCAAGACAACACTGATAACATCCAAATTAACACCCATGCCCGCACTCCCAAGCTTTGCTCCTCTGCCGAGATATGTTGGTATTTCACAGATTCCTGGGAGCAATTTCGGATAAATGGGGATGTAGATATCATTGATGGTTTGAATCCTGATCCGCTAAAACTTCAGCAAAGAGAAAAATCCTGGTTTGCCAGTTCATTGAGATCAAGATTGCAATATTTGTTGCCCAACCCTGGACTTCCCTGTCTAAATGAGCAAGCACTGCCAGAAATATCATTAGATCCTTCTATAGGTCCAGTTGATGCTTTTTGTCTACTAATCCTAGAGCCAAATCAGGTTGATTACTTGAATCTGAAGAGTAACCAGAGGCTAACTTTCAAATCAAGTGTGAGTGATGCAGCAAAGAAAAGCTGGATTGTGGAGAGGGTCAACCCATAA
>Glyma16g02580.1 sequence type=predicted peptide gene model=Glyma16g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLAWKQLLLNALESNAHLKHSSFMQLATLGTNGTPSNRTVVFRGFQDNTDNIQINTHARTPKIEELKLCSSAEICWYFTDSWEQFRINGDVDIIDGLNPDPLKLQQREKSWFASSLRSRLQYLLPNPGLPCLNEQALPEISLDPSIGPVDAFCLLILEPNQVDYLNLKSNQRLTFKSSVSDAAKKSWIVERVNP* >Glyma16g02580.2 sequence type=predicted peptide gene model=Glyma16g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLAWKQLLLNALESNAHLKHSSFMQLATLGTNGTPSNRTVVFRGFQDNTDNIQINTHARTPKLCSSAEICWYFTDSWEQFRINGDVDIIDGLNPDPLKLQQREKSWFASSLRSRLQYLLPNPGLPCLNEQALPEISLDPSIGPVDAFCLLILEPNQVDYLNLKSNQRLTFKSSVSDAAKKSWIVERVNP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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