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Report for Sequence Feature Glyma16g02531

Feature Type:gene_model
Chromosome:Gm16
Start:2098526
stop:2102759
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g02531
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18750AT Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=567 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0584 KOG Serine/threonine protein kinase JGI ISS
PTHR13902Panther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED JGI ISS
PTHR13902:SF39Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9SBD3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SBD3_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233B1E4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B1E4 related cluster n=1 Tax=unknown RepID=UPI000233B1E4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g02531
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g02531 not represented in the dataset
Glyma16g02531 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02531
ParalogEvidenceComments
Glyma07g05930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02531 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g022600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g02531
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma16g02531
>Glyma16g02531.2   sequence type=transcript   gene model=Glyma16g02531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCCCCCCCTTTTTCCCCCTTTGATTTTTTTCCTCAGAAGATTGGATAATGGGAGACCCATTTGGTAAATTTTAAACCCTTTGAAGGTTTTGGTACCTGGGTCGATGGAAAGAATGGACTTTGAGAGGAAGGCGATGGTGTGGGTTTCATTTGATTATGAATTTTTGCTCTGACATGGAAGGTTGGGTTTTGGATTTACGTTCATTGCCTCCAACCATTGTCATCGAATGTCGGTTCCAGCTGTGGTCGGCATTCGATTCCTCCTTCGTTCAGTCCCAACCTTTCTCCATTCCAATCACAAACTAGGCCCCATCCAATAAGCACAAATAAACAAAAACACAAAAAGAAGCAATTTTTTGTGTTTGGTTCTGTTTGTCTCAGCCACTAGAATGAATTCTGGTGCTGTCTTGGCATTGCCTCCAGTAAGCAATGTATTCAGGACAAGGGAACCTCATGATTTTGAGGATGACTTTGTGGAGAAAGATCCAACTGGCCGGTACATAAGGTACAATGAAATCTTGGGTAGAGGTGCCTTCAAAACCGTTTATAGGGGTTTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAAGATTGATGGCCTCATGCATTCAGTAGATGATCTTGCGAAATTGTATTCTGAAGTTAATCTATTGAAGTCTTTGAAACATGAAAATATCATTAAGTTCTATGATTCTTGGATTGATGATAAGCAGAAAACTGTTAACATGATTACTGAACTCTTCACATCAGGAAATTTAAGGCTATATCGTAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATCCTTCATGGCTTAGTATATCTTCACAGTCACAGGCCACCCATTATTCACAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAAGGTGAAGTTAAGATAGGGGACCTTGGTTTAGCAGTTGTCATGCAACAACCAACTGCCCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGGCATACACTGAACTTGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTCTTGAATATCCCTATAGTGAATGCAAAAATCCTGCTCAAATCTTTAAGAAAGTTACCTCAGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGATCCCCAACTTAAGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTTAAAGACCCATTTCTACAAGTTGAGAATCCAAAGGATCCCATCCTTTATCCTTTACAACCGCCTAGCCGAACACTGAGAGCATATTCATTCAAGTCTGGTTCTCTATCTATGGACATGGATTCTGACTGCAAACCGTTTTCTATGAGTATCTGTTCTGAAAGCAACCAGGAAAACCCACATTGTCCTGTTTTTGAAGTGCAGCGGACAAATAATAAACACGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTCCGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGCTGGCAGATCATGATGTAGATTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTACCTTGGTGGAAGCCCTCACCTGATCATTTCTCATGTGGAGAATTAAGTCCTTATAGTACAAATATAGATGGCCAATGGCCATGGGGTTCTGTCCTAACTAGTATTCCCTCTGAATTGGCTATTGATCAGGATGGCTTCTCTGGGTCTGATACAACTCCCAAAGAAGATTTTGTTGCATCTGAGAAGAGCAGCGTTTCCAAAAATGATAGCAATGCTACTTTTGAGGGTGATTGTAATTCTTCTAGTCTGGTTAAATTGGAAGATCGATATTCACAAGGATCTAGAGCTTCTGAGATGATTGTTGAAAACACTTCTATGAAAAATGACAATTGTCATGATTCCAATGCTGATGTAAGTTCTGAAAGCTTAAGTAATTCCATGTCTGAACTTGAGATTGGGGGTGCATATTTTGAGGACTGTAAATTGCAACCAGCAGAATATTGTTCTGGAGAAGGAGTTGTGATAAATGAATTCCCAAAGAACTCAGGGTCAGTTCTTGGAACGTCCATTAATGTTGAGAACCCTACAAATAGTTGTTCTTATGTGTCATCAACAGAAGAGGACATTATTGATCTTGAGCTACAGTTTAAACTTGATGAAATTGAGGCACACTATCAGCATTGGATTGATGAACTTAAGAAAATGATGTTGGAGGCATTGGATTCCACCAGAAGGAGTTGGGTGGCCAAGAAGAAATTGGCTGTTCAGTGATTTTGAGCTTGTTGATTGACCTCTTTTTACCCTTGTCAAAATTGTTTCATTGTAAATTTTGTAATCTTAACGGCAATTTGTATATTGGATGTGGCTCTTTTTAGTGGAAGCGAGTGTCCTTACCATCAACCTATTTTTTCATGCTTTGGAGATATTTCTCAGTCTCTAATTAGCATAGCATAACGTAGGAGAATGTGTCTTTAAGAAAAATTTATAGTTCTAGAAGACACATTCTGATGCAGACTCTTTGCAATTTTAGTATATTGTTCATCATTACAACTTTGCATGCCAGGATTGTTGCAAATCATTAGACTTCTTCACTCCCCGAATTAAGCATGAGAT
Coding sequences of Glyma16g02531
>Glyma16g02531.1   sequence type=CDS   gene model=Glyma16g02531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCTGGTGCTGTCTTGGCATTGCCTCCAGTAAGCAATGTATTCAGGACAAGGGAACCTCATGATTTTGAGGATGACTTTGTGGAGAAAGATCCAACTGGCCGGTACATAAGGTACAATGAAATCTTGGGTAGAGGTGCCTTCAAAACCGTTTATAGGGGTTTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAAGATTGATGGCCTCATGCATTCAGTAGATGATCTTGCGAAATTGTATTCTGAAGTTAATCTATTGAAGTCTTTGAAACATGAAAATATCATTAAGTTCTATGATTCTTGGATTGATGATAAGCAGAAAACTGTTAACATGATTACTGAACTCTTCACATCAGGAAATTTAAGGCTATATCGTAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATCCTTCATGGCTTAGTATATCTTCACAGTCACAGGCCACCCATTATTCACAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAAGGTGAAGTTAAGATAGGGGACCTTGGTTTAGCAGTTGTCATGCAACAACCAACTGCCCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGGCATACACTGAACTTGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTCTTGAATATCCCTATAGTGAATGCAAAAATCCTGCTCAAATCTTTAAGAAAGTTACCTCAGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGATCCCCAACTTAAGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTTAAAGACCCATTTCTACAAGTTGAGAATCCAAAGGATCCCATCCTTTATCCTTTACAACCGCCTAGCCGAACACTGAGAGCATATTCATTCAAGTCTGGTTCTCTATCTATGGACATGGATTCTGACTGCAAACCGTTTTCTATGAGTATCTGTTCTGAAAGCAACCAGGAAAACCCACATTGTCCTGTTTTTGAAGTGCAGCGGACAAATAATAAACACGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGCAGGTCGAGTCCGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGCTGGCAGATCATGATGTAGATTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTACCTTGGTGGAAGCCCTCACCTGATCATTTCTCATGTGGAGAATTAAGTCCTTATAGTACAAATATAGATGGCCAATGGCCATGGGGTTCTGTCCTAACTAGTATTCCCTCTGAATTGGCTATTGATCAGGATGGCTTCTCTGGGTCTGATACAACTCCCAAAGAAGATTTTGTTGCATCTGAGAAGAGCAGCGTTTCCAAAAATGATAGCAATGCTACTTTTGAGGGTGATTGTAATTCTTCTAGTCTGGTTAAATTGGAAGATCGATATTCACAAGGATCTAGAGCTTCTGAGATGATTGTTGAAAACACTTCTATGAAAAATGACAATTGTCATGATTCCAATGCTGATGTAAGTTCTGAAAGCTTAAGTAATTCCATGTCTGAACTTGAGATTGGGGGTGCATATTTTGAGGACTGTAAATTGCAACCAGCAGAATATTGTTCTGGAGAAGGAGTTGTGATAAATGAATTCCCAAAGAACTCAGGGTCAGTTCTTGGAACGTCCATTAATGTTGAGAACCCTACAAATAGTTGTTCTTATGTGTCATCAACAGAAGAGGACATTATTGATCTTGAGCTACAGTTTAAACTTGATGAAATTGAGGCACACTATCAGCATTGGATTGATGAACTTAAGAAAATGATGTTGGAGGCATTGGATTCCACCAGAAGGAGTTGGGTGGCCAAGAAGAAATTGGCTGTTCAGTGA

>Glyma16g02531.2   sequence type=CDS   gene model=Glyma16g02531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCTGGTGCTGTCTTGGCATTGCCTCCAGTAAGCAATGTATTCAGGACAAGGGAACCTCATGATTTTGAGGATGACTTTGTGGAGAAAGATCCAACTGGCCGGTACATAAGGTACAATGAAATCTTGGGTAGAGGTGCCTTCAAAACCGTTTATAGGGGTTTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAAGATTGATGGCCTCATGCATTCAGTAGATGATCTTGCGAAATTGTATTCTGAAGTTAATCTATTGAAGTCTTTGAAACATGAAAATATCATTAAGTTCTATGATTCTTGGATTGATGATAAGCAGAAAACTGTTAACATGATTACTGAACTCTTCACATCAGGAAATTTAAGGCTATATCGTAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATCCTTCATGGCTTAGTATATCTTCACAGTCACAGGCCACCCATTATTCACAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAAGGTGAAGTTAAGATAGGGGACCTTGGTTTAGCAGTTGTCATGCAACAACCAACTGCCCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGGCATACACTGAACTTGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTCTTGAATATCCCTATAGTGAATGCAAAAATCCTGCTCAAATCTTTAAGAAAGTTACCTCAGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGATCCCCAACTTAAGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTTAAAGACCCATTTCTACAAGTTGAGAATCCAAAGGATCCCATCCTTTATCCTTTACAACCGCCTAGCCGAACACTGAGAGCATATTCATTCAAGTCTGGTTCTCTATCTATGGACATGGATTCTGACTGCAAACCGTTTTCTATGAGTATCTGTTCTGAAAGCAACCAGGAAAACCCACATTGTCCTGTTTTTGAAGTGCAGCGGACAAATAATAAACACGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTCCGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGCTGGCAGATCATGATGTAGATTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTACCTTGGTGGAAGCCCTCACCTGATCATTTCTCATGTGGAGAATTAAGTCCTTATAGTACAAATATAGATGGCCAATGGCCATGGGGTTCTGTCCTAACTAGTATTCCCTCTGAATTGGCTATTGATCAGGATGGCTTCTCTGGGTCTGATACAACTCCCAAAGAAGATTTTGTTGCATCTGAGAAGAGCAGCGTTTCCAAAAATGATAGCAATGCTACTTTTGAGGGTGATTGTAATTCTTCTAGTCTGGTTAAATTGGAAGATCGATATTCACAAGGATCTAGAGCTTCTGAGATGATTGTTGAAAACACTTCTATGAAAAATGACAATTGTCATGATTCCAATGCTGATGTAAGTTCTGAAAGCTTAAGTAATTCCATGTCTGAACTTGAGATTGGGGGTGCATATTTTGAGGACTGTAAATTGCAACCAGCAGAATATTGTTCTGGAGAAGGAGTTGTGATAAATGAATTCCCAAAGAACTCAGGGTCAGTTCTTGGAACGTCCATTAATGTTGAGAACCCTACAAATAGTTGTTCTTATGTGTCATCAACAGAAGAGGACATTATTGATCTTGAGCTACAGTTTAAACTTGATGAAATTGAGGCACACTATCAGCATTGGATTGATGAACTTAAGAAAATGATGTTGGAGGCATTGGATTCCACCAGAAGGAGTTGGGTGGCCAAGAAGAAATTGGCTGTTCAGTGA
Predicted protein sequences of Glyma16g02531
>Glyma16g02531.1   sequence type=predicted peptide   gene model=Glyma16g02531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSGAVLALPPVSNVFRTREPHDFEDDFVEKDPTGRYIRYNEILGRGAFKTVYRGFDEVDGIEVAWNQVKIDGLMHSVDDLAKLYSEVNLLKSLKHENIIKFYDSWIDDKQKTVNMITELFTSGNLRLYRKKHKYVEMKAIKGWARQILHGLVYLHSHRPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAVVMQQPTAQSVIGTPEFMAPELYEEAYTELVDIYSFGMCILEMVTLEYPYSECKNPAQIFKKVTSGIKPASLNKVSDPQLKEFIEKCLVPASERLSAEELLKDPFLQVENPKDPILYPLQPPSRTLRAYSFKSGSLSMDMDSDCKPFSMSICSESNQENPHCPVFEVQRTNNKHEFRLKGTKNDDNSVSLTLRIADTCAGRVRNIHFLFYLDTDTAVSVATEMVEHLELADHDVDFIAELIDYLIMKLLPWWKPSPDHFSCGELSPYSTNIDGQWPWGSVLTSIPSELAIDQDGFSGSDTTPKEDFVASEKSSVSKNDSNATFEGDCNSSSLVKLEDRYSQGSRASEMIVENTSMKNDNCHDSNADVSSESLSNSMSELEIGGAYFEDCKLQPAEYCSGEGVVINEFPKNSGSVLGTSINVENPTNSCSYVSSTEEDIIDLELQFKLDEIEAHYQHWIDELKKMMLEALDSTRRSWVAKKKLAVQ*

>Glyma16g02531.2   sequence type=predicted peptide   gene model=Glyma16g02531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSGAVLALPPVSNVFRTREPHDFEDDFVEKDPTGRYIRYNEILGRGAFKTVYRGFDEVDGIEVAWNQVKIDGLMHSVDDLAKLYSEVNLLKSLKHENIIKFYDSWIDDKQKTVNMITELFTSGNLRLYRKKHKYVEMKAIKGWARQILHGLVYLHSHRPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAVVMQQPTAQSVIGTPEFMAPELYEEAYTELVDIYSFGMCILEMVTLEYPYSECKNPAQIFKKVTSGIKPASLNKVSDPQLKEFIEKCLVPASERLSAEELLKDPFLQVENPKDPILYPLQPPSRTLRAYSFKSGSLSMDMDSDCKPFSMSICSESNQENPHCPVFEVQRTNNKHEFRLKGTKNDDNSVSLTLRIADTCGRVRNIHFLFYLDTDTAVSVATEMVEHLELADHDVDFIAELIDYLIMKLLPWWKPSPDHFSCGELSPYSTNIDGQWPWGSVLTSIPSELAIDQDGFSGSDTTPKEDFVASEKSSVSKNDSNATFEGDCNSSSLVKLEDRYSQGSRASEMIVENTSMKNDNCHDSNADVSSESLSNSMSELEIGGAYFEDCKLQPAEYCSGEGVVINEFPKNSGSVLGTSINVENPTNSCSYVSSTEEDIIDLELQFKLDEIEAHYQHWIDELKKMMLEALDSTRRSWVAKKKLAVQ*






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