SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G76390 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr1:28655914-28658531 FORWARD LENGTH=811 | SoyBase | E_val: 1.00E-61 | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| KOG4642 | KOG | Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) | JGI | ISS | |
| PTHR23315 | Panther | BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING | JGI | ISS | |
| PTHR23315:SF36 | Panther | ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE (OS01G094 | JGI | ISS | |
| PF04564 | PFAM | U-box domain | JGI | ISS | |
| PF05804 | PFAM | Kinesin-associated protein (KAP) | JGI | ISS | |
| UniRef100_G7LAU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LAU3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B06B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B06B related cluster n=1 Tax=unknown RepID=UPI000233B06B | SoyBase | E_val: 0 | ISS |
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Glyma16g02470 not represented in the dataset |
Glyma16g02470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g05870 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g022000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g02470.2 sequence type=CDS gene model=Glyma16g02470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGTTCTAGATGTGTTATCTGGTCCTACCGGAACGGCCATTTCTCAAACTGTAGATACCATTGCTGACTTCCTAGTTACTGCCAATGATGTCCTTGTGCAAAAGGATAGTTTTAAGGAACTTGCTGCTTACATGGAAAGAATTAAGCCAGTCTTAGAAGAATTGAGGAAAGGAAAAGTCAGTGATTCTGAGAGGTTCAACCGCACCATTGAGATCATGAATAAAGAAATTAAAGATGCAAACCAACTATGTCTAGATTGCAGCAAGAAGAGTAAGTTTTATCTACTAATGAACTGCAGGTCCATAGCTAAGAGCTTAGAAAACCACACAAAACAGCTGAGTAGGGCACTTGGTCTTCTTCCTTTAGCCACAACAGGACTTTCTTCAGGAATAGGTGAAGAAATTGAAAAGCTATGCGAAGATATGAAGACAGCTGGATTTAAGGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATCGAGTCAGGGATAAGGGAAAACAATGTTGACCGTTCCTACGCCAATAAGTTGCTACTTGACATTACTGATGCTGTTGGGATTGGGAATGAGAGGTCAACAATAAAGATAGAACTTGAAGAGTTTAAGAGTGAGATTGAAAATGCGCGTGTTAGGAAGGACTTGGCCGAGGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCAACTAAGGACAAGGAACTCAAATACTTTGCGAAACGCCAATCTTTGGGTACTCAAATCATGGAGCCTTTGCAGTCATTTTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCAGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCTGAAGGAAACAAATTGTGCCCCTTGACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAAAAAGTTGAAACAATCCATACAAGAGTGGAAAGATAGAAATATAATGATTACAATTGCCACATTGAAAGAAAAAATCCTATCTGGAAATGATGAAGAAGTGCTGCATGATCTGGAAACTCTTCAGACTTTGTGTGAAGAAAAAAACCAACACAGGGAATGGGTGATTTTAGAGGATTACATACAAACTCTCATCCAAATTTTGTCAAAAAACCGTGATATAAGGAAATTATCTCTTTTCATCCTTGGCATGCTGGCAAAGGACAATGAAGACGCTAAGAAAAGAATTTCAGCCGCTGACCATGCAATTGAATCGATTGTTCGGTCTCTTGGACGTCGTCCTGAGGAAAGGAAGTTAGCAGTGGCGTTACTGCTCGAGTTATCCAAATATGATGCGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACCATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTGGAGAATCTTTCGTACTCCGCTCAGAATGTTATACAGATGGCAAAAACAAATTACTTCAAGCATTTATTGCAGCATCTCTCCACAGGACCAGATGACGTAAAGATGACTATGGCCACAAATTTAGCCGAAATGGAGTTAACTGACCACAATAGGGAGTCCTTATTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTCTTACATAATGATCTACAGGTGAAAACTGTTGCTATTAAGGCACTTAAGAATTTATCCAGCTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGAGCTGCACGGCCACTACTTAACCTTCTTTTCAATCAAAGCTTACACACCACAGGTTTGTGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAGGATTCCCAAACACCTGTTTTATTACTAGATTTTGATGATGATGTTTCCCGTCTCTTCAATTTAGTTAGTGTCCCACAGTCTGCTGTGCAAGTGCAACAAAACATTATCCAGACCTTTTATTCCTTGTGTCAAACACCCTCAGCTTCATTTATCAGAACCAAACTAATAGAGTGCTCAGCGGTTCCAGAATTGGTTCAACTGTGTGAGAATGAAAACCTAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGACGAAGGCATCATACAGGAGCATGTGAATCAGAAATGCATTAATACTCTACTCCAGATCATAAAATCTCCATCTGATGAAGAGGAAATACTTTCTGCCATGGGAATAATATGCTATCTTCCCGAAGTTGACCAGATAACTCAATGGCTTTTGGATGCTGGTGCACTGCCAATCATTAAAACTTACGTCCAAAATGGGGAAAACAGAGATCATCAAAGGAATAACTTAGTAGAGAATGCCATTGGTGCCCTATGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACTGGGATCATGACTCTTTTAGTGCAGCTGCTTGAAAATGGAACAAACTTGACAAAGCAACGCGTGGCACAGTCTCTTGCTCAATTTTCTAAAAGCTCATTTAAGCTGAGCCGGCCAATATCAAAGCGCAAAGGACTGTGGTGTTTCTCAGCTCCTGCTGACATTGGCTGCATGGTTCATGAAGGAATATGCTCAGTCAAATCATCATTTTGCCTTTTGGAGGCTAATGCAGTTGGACCACTCACAAGGACTCTTGGGGAACCTGATCCCGGAGTTTGTGAGGCTTCTTTGGACGCTCTATTAACATTAATTGAAGGTGAAAGACTTCAGAGTGGTAGTAAAGTGCTTTCAGAAGCAAATGCCATACCACTAATAATAAGATACCTTGGCTCCACCTCCCCTGGCTTGCAGGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGCTGGTCGAATACAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGGGTAATGGTAGTGTTAGGTCCATGTCAGCTAGAATATTGGCACATTTGAACGTGCTTCACGATCAATCTTCATATTTCTAA
>Glyma16g02470.2 sequence type=predicted peptide gene model=Glyma16g02470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMVLDVLSGPTGTAISQTVDTIADFLVTANDVLVQKDSFKELAAYMERIKPVLEELRKGKVSDSERFNRTIEIMNKEIKDANQLCLDCSKKSKFYLLMNCRSIAKSLENHTKQLSRALGLLPLATTGLSSGIGEEIEKLCEDMKTAGFKAALAEEEILEKIESGIRENNVDRSYANKLLLDITDAVGIGNERSTIKIELEEFKSEIENARVRKDLAEAMQMDQIIALLERADAASSTKDKELKYFAKRQSLGTQIMEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKKLKQSIQEWKDRNIMITIATLKEKILSGNDEEVLHDLETLQTLCEEKNQHREWVILEDYIQTLIQILSKNRDIRKLSLFILGMLAKDNEDAKKRISAADHAIESIVRSLGRRPEERKLAVALLLELSKYDAAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSYSAQNVIQMAKTNYFKHLLQHLSTGPDDVKMTMATNLAEMELTDHNRESLFDGGVLVPLLHMFLHNDLQVKTVAIKALKNLSSSKKNGQEMIRQGAARPLLNLLFNQSLHTTGLWEDVAAIIMQLAASTISQDSQTPVLLLDFDDDVSRLFNLVSVPQSAVQVQQNIIQTFYSLCQTPSASFIRTKLIECSAVPELVQLCENENLNLRASAVKLFSCLVESCDEGIIQEHVNQKCINTLLQIIKSPSDEEEILSAMGIICYLPEVDQITQWLLDAGALPIIKTYVQNGENRDHQRNNLVENAIGALCRFTVPTNLEWQKSAAETGIMTLLVQLLENGTNLTKQRVAQSLAQFSKSSFKLSRPISKRKGLWCFSAPADIGCMVHEGICSVKSSFCLLEANAVGPLTRTLGEPDPGVCEASLDALLTLIEGERLQSGSKVLSEANAIPLIIRYLGSTSPGLQEKSLHALERIFRLVEYKQMYGASAQMPLVDLTQRGNGSVRSMSARILAHLNVLHDQSSYF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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