SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61870 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr3:22902702-22903895 FORWARD LENGTH=272 | SoyBase | E_val: 1.00E-111 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_C6TKB0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKB0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9M277 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3g61870/F21F14_40 n=1 Tax=Arabidopsis thaliana RepID=Q9M277_ARATH | SoyBase | E_val: 7.00E-109 | ISS |
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Glyma16g02440 not represented in the dataset |
Glyma16g02440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g021600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g02440.1 sequence type=CDS gene model=Glyma16g02440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGCTCATGGCCTCTACCCTCCCTTTCCCAACACTTTCCATTCTTCCTCACAAGGCACACTGCAAATCAACACCAAAACTTCATCCACTTCCTCACATCTCTTCAAGATTGAATGTTGTTTCAAAAGATCCTCCCATATTATTAGATCAATCTTGCAATGTTCTAAAAAATGCCTCTCTTTCCCTCACATCAATCACACTCCCCTTTTTATTGGAACAAAAGGATGTGGCACTTGCTGTTGAAGGGGAATTTGGGATATTGGAAGGAAGAACATTTGCTCTCATACACCCCATTGTGATGGCTTCTTTGTTCTTGTACACCTTGTGGGCAGGATATTTGGGGTGGCAGTGGAGGAGAGTGAGGACTATTCAGAATGAGATTAATGAGTTAAAGAAACAAGTGAAGCCTACCCCAGTCACCCCAGAAGAAGTGCCACCACCATCAGAAATTGAGCTCAAAATTCAGCAACTTACTGAGGAGAGGAAAGAGCTGCTAAAAGGGTCTTACAAGGATAGGCATTATAATGCAGGATCCATACTTCTAGGATTTGGGGTGCTTGAGGCTGTTGGTGGAGGATTGAACACTTGGATTAGGACAGGGAAGCTATTCCCAGGCCCACATTTGTTTGGAGGAGCAGCTATTGCAGTGTTGTGGGCACTTTCAGCAGCATTGGTACCATCAATGCAGAGAGGGAGTGAAACAGCAAGAAGTCTTCACATTGCTTTGAATACATTAAACGTGCTGCTATTTGTGTCACAGCTTCCCACTGGATTTGACATTTTATTGAAAGTGTTTGAGTTCACAAACTGGCCTTGA
>Glyma16g02440.1 sequence type=predicted peptide gene model=Glyma16g02440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLMASTLPFPTLSILPHKAHCKSTPKLHPLPHISSRLNVVSKDPPILLDQSCNVLKNASLSLTSITLPFLLEQKDVALAVEGEFGILEGRTFALIHPIVMASLFLYTLWAGYLGWQWRRVRTIQNEINELKKQVKPTPVTPEEVPPPSEIELKIQQLTEERKELLKGSYKDRHYNAGSILLGFGVLEAVGGGLNTWIRTGKLFPGPHLFGGAAIAVLWALSAALVPSMQRGSETARSLHIALNTLNVLLFVSQLPTGFDILLKVFEFTNWP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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