Glyma16g02410 - SoyBase

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Report for Sequence Feature Glyma16g02410

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1985573
stop:	1990713
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53560	AT	Annotation by Michelle Graham. TAIR10: cytochrome B5 isoform E \| chr5:21759628-21760353 FORWARD LENGTH=134	SoyBase	E_val: 2.00E-54	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0537	KOG	Cytochrome b5	JGI		ISS
PTHR19359	Panther	CYTOCHROME B5	JGI		ISS
PF00173	PFAM	Cytochrome b5-like Heme/Steroid binding domain	JGI		ISS
UniRef100_B7FGY0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome b5 n=2 Tax=Medicago truncatula RepID=B7FGY0_MEDTR	SoyBase	E_val: 5.00E-69	ISS
UniRef100_I1MKF6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKF6_SOYBN	SoyBase	E_val: 7.00E-105	ISS

Expression Patterns of Glyma16g02410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g02410 not represented in the dataset	Glyma16g02410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02410

Paralog	Evidence	Comments
Glyma07g05830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g021300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g02410

Limit To All Plant Sequences

>Glyma16g02410.2   sequence type=transcript   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAAGGTTGTTGAGAAAGAGAAACCACAACAAAAAGTGGTGTCCTAAAGAAAGACCATCTTTCTCTTTTCTGTATCACCGTTGGAAGAGACTGAGATGGGTTCAAAAACCAAGACTTTTACCTTTGAAGAGGTGGCTAAACACAATCACAGGAAGGATTGTTGGATTATAGTCAAAGGGAAGGTGTATGATGTCACCCCATTTTTGGATGATCATCCAGGAGGTGATGAAGTTTTAGTGACTGCAACAGAGAAGGATGCCACCACTGATTTTGAAGATATTGGCCACAGTGATTCAGCAACACAGATGATGGAAAAATACTTTGTTGGGGAGGTTGACACCAACACTCTTCCAGCACAAGTTACCAGCAACAACAGTGTACGCCAACCAACACAAGCACCACCTGCCTATAACAATCAATCTTCAGGATTTGTTGTGAAGATGTTGCAGTACATAGTGCCATTGCTGATATTGGCCTTTGCATTTGGCCTGCAGTACTATGGCAAAAAAAACAAGTCCACTGAGTCAGAAAATTGAATTTGAGTTTGTGACCATTGTTTTAGTGGTAATAATAGACTGGTGGCAGTGTTGTTTCTTTTCTTTTCTTTTTGGGGTATCATTTAAAACTACTTCACTATCTCAAATACCATGCGGGGATTAATTTTGTATTCTTAGTGTGTTGTGGCCTCTTGCTCAAGTTATGCTTGTTGTTATTTAGGTACCGTTCGATTGAGTGGAAAGAAAAGAAATAAAAGTTCTAAATCAGAGTAAAAAGGTGTTGGATCATCTCATGATACTATTCATTTATTCTCTTTCCCCCTTTCTTCTCAAGCAAATGGAGACTTAGACTCAATCTAGTATCTCGTGAATAATATTTTGAAATAGATTCAATTAAACCTAGTAATTGCAGTACATATAATGCTATTTTCTGTTATGTTCCATGTTTGTAACCCTGACTAAATATTGTTTTGTTAAAAAGATTGAATCGTTTAATGGCAGGTAATCAAAG

>Glyma16g02410.3   sequence type=transcript   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAAGAAAATTTCTTCTTCAACTTTTCCTATCAATGTGGAAGAGACTGAGATGGGTTCAAAAACCAAGACTTTTACCTTTGAAGAGGTGGCTAAACACAATCACAGGAAGGATTGTTGGATTATAGTCAAAGGGAAGGTGTATGATGTCACCCCATTTTTGGATGATCATCCAGGAGGTGATGAAGTTTTAGTGACTGCAACAGAGAAGGATGCCACCACTGATTTTGAAGATATTGGCCACAGTGATTCAGCAACACAGATGATGGAAAAATACTTTGTTGGGGAGGTTGACACCAACACTCTTCCAGCACAAGTTACCAGCAACAACAGTGTACGCCAACCAACACAAGCACCACCTGCCTATAACAATCAATCTTCAGGATTTGTTGTGAAGATGTTGCAGTACATAGTGCCATTGCTGATATTGGCCTTTGCATTTGGCCTGCAGTACTATGGCAAAAAAAACAAGTCCACTGAGTCAGAAAATTGAATTTGAGTTTGTGACCATTGTTTTAGTGGTAATAATAGACTGGTGGCAGTGTTGTTTCTTTTCTTTTCTTTTTGGGGTATCATTTAAAACTACTTCACTATCTCAAATACCATGCGGGGATTAATTTTGTATTCTTAGTGTGTTGTGGCCTCTTGCTCAAGTTATGCTTGTTGTTATTTAGGTACCGTTCGATTGAGTGGAAAGAAAAGAAATAAAAGTTCTAAATCAGAGTAAAAAGGTGTTGGATCATCTCATGATACTATTCATTTATTCTCTTTCCCCCTTTCTTCTCAAGCAAATGGAGACTTAGACTCAATCTAGTATCTCGTGAATAATATTTTGAAATAGATTCAATTAAACCTAGTAATTGCAGTACATATAATGCTATTTTCTGTTATGTTCCATGTTTGTAA

Coding sequences of Glyma16g02410

Limit To All Plant Sequences

>Glyma16g02410.1   sequence type=CDS   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAAAAACCAAGACTTTTACCTTTGAAGAGGTGGCTAAACACAATCACAGGAAGGATTGTTGGATTATAGTCAAAGGGAAGGTGTATGATGTCACCCCATTTTTGGATGATCATCCAGGAGGTGATGAAGTTTTAGTGACTGCAACAGAGAAGGATGCCACCACTGATTTTGAAGATATTGGCCACAGTGATTCAGCAACACAGATGATGGAAAAATACTTTGTTGGGGAGGTTGACACCAACACTCTTCCAGCACAAGTTACCAGCAACAACAGTGTACGCCAACCAACACAAGCACCACCTGCCTATAACAATCAATCTTCAGGATTTGTTGTGAAGATGTTGCAGTACATAGTGCCATTGCTGATATTGGCCTTTGCATTTGGCCTGCAGTACTATGGCAAAAAAAACAAGTCCACTGAGTCAGAAAATTGA

>Glyma16g02410.2   sequence type=CDS   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAAAAACCAAGACTTTTACCTTTGAAGAGGTGGCTAAACACAATCACAGGAAGGATTGTTGGATTATAGTCAAAGGGAAGGTGTATGATGTCACCCCATTTTTGGATGATCATCCAGGAGGTGATGAAGTTTTAGTGACTGCAACAGAGAAGGATGCCACCACTGATTTTGAAGATATTGGCCACAGTGATTCAGCAACACAGATGATGGAAAAATACTTTGTTGGGGAGGTTGACACCAACACTCTTCCAGCACAAGTTACCAGCAACAACAGTGTACGCCAACCAACACAAGCACCACCTGCCTATAACAATCAATCTTCAGGATTTGTTGTGAAGATGTTGCAGTACATAGTGCCATTGCTGATATTGGCCTTTGCATTTGGCCTGCAGTACTATGGCAAAAAAAACAAGTCCACTGAGTCAGAAAATTGA

>Glyma16g02410.3   sequence type=CDS   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAAAAACCAAGACTTTTACCTTTGAAGAGGTGGCTAAACACAATCACAGGAAGGATTGTTGGATTATAGTCAAAGGGAAGGTGTATGATGTCACCCCATTTTTGGATGATCATCCAGGAGGTGATGAAGTTTTAGTGACTGCAACAGAGAAGGATGCCACCACTGATTTTGAAGATATTGGCCACAGTGATTCAGCAACACAGATGATGGAAAAATACTTTGTTGGGGAGGTTGACACCAACACTCTTCCAGCACAAGTTACCAGCAACAACAGTGTACGCCAACCAACACAAGCACCACCTGCCTATAACAATCAATCTTCAGGATTTGTTGTGAAGATGTTGCAGTACATAGTGCCATTGCTGATATTGGCCTTTGCATTTGGCCTGCAGTACTATGGCAAAAAAAACAAGTCCACTGAGTCAGAAAATTGA

Predicted protein sequences of Glyma16g02410

Limit To All Plant Sequences

>Glyma16g02410.1   sequence type=predicted peptide   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKTKTFTFEEVAKHNHRKDCWIIVKGKVYDVTPFLDDHPGGDEVLVTATEKDATTDFEDIGHSDSATQMMEKYFVGEVDTNTLPAQVTSNNSVRQPTQAPPAYNNQSSGFVVKMLQYIVPLLILAFAFGLQYYGKKNKSTESEN*

>Glyma16g02410.2   sequence type=predicted peptide   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKTKTFTFEEVAKHNHRKDCWIIVKGKVYDVTPFLDDHPGGDEVLVTATEKDATTDFEDIGHSDSATQMMEKYFVGEVDTNTLPAQVTSNNSVRQPTQAPPAYNNQSSGFVVKMLQYIVPLLILAFAFGLQYYGKKNKSTESEN*

>Glyma16g02410.3   sequence type=predicted peptide   gene model=Glyma16g02410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKTKTFTFEEVAKHNHRKDCWIIVKGKVYDVTPFLDDHPGGDEVLVTATEKDATTDFEDIGHSDSATQMMEKYFVGEVDTNTLPAQVTSNNSVRQPTQAPPAYNNQSSGFVVKMLQYIVPLLILAFAFGLQYYGKKNKSTESEN*

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