Glyma16g02310 - SoyBase

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Report for Sequence Feature Glyma16g02310

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1837123
stop:	1841169
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00850	AT	Annotation by Michelle Graham. TAIR10: GRF1-interacting factor 3 \| chr4:357675-358928 FORWARD LENGTH=223	SoyBase	E_val: 2.00E-64	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3227	KOG	Calcium-responsive transcription coactivator	JGI		ISS
PTHR23107	Panther	SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN	JGI		ISS
PF05030	PFAM	SSXT protein (N-terminal region)	JGI		ISS
UniRef100_B9SVF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Synovial sarcoma associated ss18 protein, putative n=1 Tax=Ricinus communis RepID=B9SVF1_RICCO	SoyBase	E_val: 7.00E-86	ISS
UniRef100_I1MKE7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKE7_SOYBN	SoyBase	E_val: 9.00E-145	ISS

Expression Patterns of Glyma16g02310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g02310 not represented in the dataset	Glyma16g02310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02310

Paralog	Evidence	Comments
Glyma07g05720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g020400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g02310

Limit To All Plant Sequences

>Glyma16g02310.4   sequence type=transcript   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGCCGAACCTTAAACACAAACGCCAAATCTAGCAACTATTGAGTTTTGTTTTCTTTGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACGAAGACAAACCTCTGTTCTCAACTGTGTTTCTTTACCTCTCACCTACTTTCAGACCATACCCAGATTGACTAGGCTGAGAAGATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATTTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTTCTTTAAAGGTAGGACTAGTGTGATCTGATGACCTTTAATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGATTAGGTAGTTTGTGTTGTTAGAATTTTGGCACAAAGCAAGTTTGCATCAACTGAAACTGCTGGTGCCTCAACATACTGTACTCGTCACTGGAAGGTCTAAGCATGTGTTATTTATGATCACCTAAATAGCTTGCTGGTTTTTAAC

>Glyma16g02310.6   sequence type=transcript   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACAGTACAATACAATACAATGGTCCGAACCGGGTTCGAAACGCAGCACGAGCAGCAACAACAGTCAAACTCAAAACAGTGGGAATGCGAAGACCTATAAATAGCGAACACTTGAGCCTTGTCTTTGTTAGTTTGGAATTGGAACTACCGAAAGCCGAACCTTAAACACAAACGCCAAATCTAGCAACTATTGAGTTTTGTTTTCTTTGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACGAAGACAAACCTCTGTTCTCAACTGTGTTTCTTTACCTCTCACCTACTTTCAGACCATACCCAGGCTGAGAAGATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATTTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTTCTTTAAAGGTAGGACTAGTGTGATCTGATGACCTTTAATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGATTAGGTAGTTTGTGTTGTTAGAATTTTGGCACAAAGCAAGTTTGCATCAACTGAAACTGCTGGTGCCTCAACATACTGTACTCGTCACTGGAAGGTCTAAGCATGTGTTATTTATGATCACCTAAATAGCTTGCTGGTTTTTAACAATTTTTCATTGCAGTTTGTTGTGGTCATATAAACAAAAAAAAAATGCTTGTTTTTGGTAATTCTGCTGGATTCTAGGCGTCAATTGAAACGTGAAATGCAGTGGATGGATTCTCTGTCTGAATTTAGTTCAGGTCTATTCTTCATTAGGCCCTGAACTTGCAATTCAGGAACAAGTACTTTGAGCTGCCGCTAAAGGATATTTGCC

>Glyma16g02310.7   sequence type=transcript   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTGGAATTGGAACTACCGAAAGCCGAACCTTAAACACAAACGCCAAATCTAGCAACTATTGAGTTTTGTTTTCTTTGGTTGGTATTTTTTTTTTTTATTTGACACTGCCAAGTACTAAACTAACCTTAATCTATTCCTTTGTTTTTTATGTTGTTTGCTTTGTCTTCAAATTCCAGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACGAAGACAAACCTCTGTTCTCAACTGTGTTTCTTTACCTCTCACCTACTTTCAGACCATACCCAGGCTGAGAAGATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATTTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTTCTTTAAAGGTAGGACTAGTGTGATCTGATGACCTTTAATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGATTAGGTAGTTTGTGTTGTTAGAATTTTGGCACAAAGCAAGTTTGCATCAACTGAAACTGCTGGTGCCTCAACATACTGTACTCGTCACTGGAAGGTCTAAGCATGTGTTATTTATGATCACCTAAATAGCTTGCTGGTTTTTAACAATTTTTCATTGCAGTTTGTTGTGGTCATATAAACAAAAAAAAAATGCTTGTTTTTGGTAATTCTGCTGGATTCTAGGCGTCAATTGAAACGTGAAATGCAGTGGATGGATTCTCTGTCTGAATTTAGTTCAGGTCTATTCTTCATTAGGCCCTGAACTTGCAATTCAGGAACAAGTACTTTGAGCTGCCGCTAAAGGATATTTGCC

Coding sequences of Glyma16g02310

Limit To All Plant Sequences

>Glyma16g02310.3   sequence type=CDS   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma16g02310.4   sequence type=CDS   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma16g02310.6   sequence type=CDS   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma16g02310.7   sequence type=CDS   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

Predicted protein sequences of Glyma16g02310

Limit To All Plant Sequences

>Glyma16g02310.3   sequence type=predicted peptide   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma16g02310.4   sequence type=predicted peptide   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma16g02310.6   sequence type=predicted peptide   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma16g02310.7   sequence type=predicted peptide   gene model=Glyma16g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

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