Glyma16g02280 - SoyBase

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Report for Sequence Feature Glyma16g02280

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1790403
stop:	1795690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46760	AT	Annotation by Michelle Graham. TAIR10: D-arabinono-1,4-lactone oxidase family protein \| chr2:19213028-19215166 REVERSE LENGTH=603	SoyBase	E_val: 0	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003885	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-arabinono-1,4-lactone oxidase activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG4730	KOG	D-arabinono-1, 4-lactone oxidase	JGI		ISS
PTHR13878	Panther	GULONOLACTONE OXIDASE	JGI		ISS
PTHR13878:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
PF04030	PFAM	D-arabinono-1,4-lactone oxidase	JGI		ISS
UniRef100_B9SVF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gulonolactone oxidase, putative n=1 Tax=Ricinus communis RepID=B9SVF9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MKE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MKE1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g02280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g02280 not represented in the dataset	Glyma16g02280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g02280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g020100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g02280

Limit To All Plant Sequences

>Glyma16g02280.1   sequence type=CDS   gene model=Glyma16g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATTATTATTGTTAATATTATTCTGCTTGAAAATGATGTCAAACAAAGCCTTAACTTCAACTCTTGTTTTTCTTTTCTTCTCCGTGGTGCTCTCTACTCCTCCAGAGGATCCAATCAAGTGTTCTAATTCAAAGAACACAAGTTGCACCATCACCAACTCCTATGGCATGTTCCCTGATAGAAGCATCTGCAAGGCCTCTCAAGTGTTGTACCCAACCTCTGAGCAAGAGCTTGTGTCAGTGGTTGCATCAGCAACAAGAAACAAAACCAAGATGAAAGTAGCTACCCGTTATTCCCATAGTATCCCTAAATTGGTGTGCCCAGAAGGAGAAAATGGGTTGCTAATAAGCACCAAATATCTCAACAAAATAGCGAAGGTTGATGTGGAAGCAAGGACAATGACTGTGGAGAGTGGTGTGACAATGAAGCAGCTTATAAATGAGGCTGCAAAGGTAGGGTTGGCCTTGCCATATGCACCATATTGGTGGGGTTTGACCATTGGAGGGCTTATGGGAACTGGTGCTCATGGAAGCACTTTGTGGGGGAAGGGTAGTTCTGTCCATGATTATGTGGTGGAGCTTAGGATTGTTAGGGCTGCTGGTCCTGAAGAGGGTTATGCTAAGGCTGAGAGCCTCAATGAACAACATGAAGATCTCAATGCTGCCAAAGTGTCACTTGGTGTGCTTGGAGTTATTTCACAGGTTACTCTAAAACTAGAACCCCTCTTCAAGCGATCCATCACATATGTGGCAAAAAATGATTCAGATTTGGGAGACCAAGTGGCTGCTTTCGGACATGCACATGAGTTTGCAGATATAACGTGGTACCCTAGTCAACGCAAGGCTGTTTACCGTGTTGACGATCGTGTCCCATTTAATACTTCTGGCAATGGTCTTTATGACTTTATCCCTTTCCGTCCCACTCCTTCTCTTGAATTGGCTATCTTAAGAACCACAGAGGATCTTCAAGAATCAACTGGTGATGCCGATGGAAAGTGCATAGGTTCTAAGACCACAACGAATACCCTCATCACTGCAGCTTATGGACTTACTAACAATGGTATAATCTTCACTGTATATCCTGTAATTGGATTTCAGAATCGTCTTCAAGCATCTGGGTCATGCTTAGATAGTCTTCAAGATGCAAAGATCACAGCATGTGCCTGGGATTCTAGGGTGAAGGGAGAGTTCTTTCACCAAACCACATTTAGCATCAGTTTGTCTGTTGCAAAAAAATTTATTGAAGATGTGCAAAAGCTAGTTCAATTGGAGCCGAAGGGATTTTGTGGCATAGAGCTTTACAATGGAATTCTCATGCGTTATGTCAAGGCTTCGAGTGCCTATTTGGGGAAGCAAGAGGATGCTTTAGACATTGATATCACTTACTACCGTAGCAAGGATCCAATGACTCCTAGGCTTTATGAAGACATTCTTGAAGAGGTTGAACAACTTGGGATTTTCAAATATGGAGGGCTACCTCATTGGGGTAAGAATAGGAACTTGGCATTTGAAGGAGCCATCAAGAAGTACAAAAATGCAGGGAGATTTTTAAGGGTTAAAGAGAAGTATGATTTACAAGGGCTTTTCTCAAGTACATGGACAGACCAAATGCTTGGGCTAAAGGATGGAGTGACAATATTGAAGGATGGGTGTGCATTAGAAGGTTTATGCATTTGCTCACAGGATAGTCATTGCAATCCAAGCAAAGATTACTATTGTAAACCAGGCAAAGTTTACAAGGAAGCAAGGGTTTGTACTCATTTGAAATCCAAATGA

Predicted protein sequences of Glyma16g02280

Limit To All Plant Sequences

>Glyma16g02280.1   sequence type=predicted peptide   gene model=Glyma16g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLLLLILFCLKMMSNKALTSTLVFLFFSVVLSTPPEDPIKCSNSKNTSCTITNSYGMFPDRSICKASQVLYPTSEQELVSVVASATRNKTKMKVATRYSHSIPKLVCPEGENGLLISTKYLNKIAKVDVEARTMTVESGVTMKQLINEAAKVGLALPYAPYWWGLTIGGLMGTGAHGSTLWGKGSSVHDYVVELRIVRAAGPEEGYAKAESLNEQHEDLNAAKVSLGVLGVISQVTLKLEPLFKRSITYVAKNDSDLGDQVAAFGHAHEFADITWYPSQRKAVYRVDDRVPFNTSGNGLYDFIPFRPTPSLELAILRTTEDLQESTGDADGKCIGSKTTTNTLITAAYGLTNNGIIFTVYPVIGFQNRLQASGSCLDSLQDAKITACAWDSRVKGEFFHQTTFSISLSVAKKFIEDVQKLVQLEPKGFCGIELYNGILMRYVKASSAYLGKQEDALDIDITYYRSKDPMTPRLYEDILEEVEQLGIFKYGGLPHWGKNRNLAFEGAIKKYKNAGRFLRVKEKYDLQGLFSSTWTDQMLGLKDGVTILKDGCALEGLCICSQDSHCNPSKDYYCKPGKVYKEARVCTHLKSK*

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