SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46760 | AT | Annotation by Michelle Graham. TAIR10: D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603 | SoyBase | E_val: 0 | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003885 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: D-arabinono-1,4-lactone oxidase activity | SoyBase | N/A | ISS |
| GO:0008762 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG4730 | KOG | D-arabinono-1, 4-lactone oxidase | JGI | ISS | |
| PTHR13878 | Panther | GULONOLACTONE OXIDASE | JGI | ISS | |
| PTHR13878:SF10 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01565 | PFAM | FAD binding domain | JGI | ISS | |
| PF04030 | PFAM | D-arabinono-1,4-lactone oxidase | JGI | ISS | |
| UniRef100_B9S3D0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: D-lactate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S3D0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MKD9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKD9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g02250 not represented in the dataset |
Glyma16g02250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g05690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g019900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g02250.1 sequence type=CDS gene model=Glyma16g02250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATTTTTAAGCTTGACAATGATGTCAAACATAGCCTTCAGATTAACTCTTGTCTTTCTTTTATTTTCTGCGGTGCTCTCTACTCCTCCAGAGGATCCAATCAAGTGCGCCACTTCAGAGAACACAACCTGCACTATCACAAACTCCTATGGCGCCTTCCCTGATCGAAGCATTTGCAAAGCTGCTCAAGTGTTGTACCCCACCACCGAGCAAGAGCTTGTGTCAGTGGTTGCATCAGCAACCAGAAACAAAACCAAGATGAAAGTAGCTACCCGTTTTTCCCACAGCATCCCCAAGCTGGTGTGCCCAGAAGGCGAAAATGGGTTGTTAATAAGCACCAAATATCTCAACAAAATATTGAAGGTTGATGTGGAAACAAGAACAATGACTGTGGAGAGTGGTGTGACTCTGCAGCAACTTATAAATGAGGCTGCAAAGGTAGGGTTGGCCTTGCCATATGCACCATATTGGTGGGGTTTGACCATTGGAGGGCTTATGGGAACTGGTGCTCATGGAAGCACTTTGCGGGGGAAGGGAAGTGCTGTCCATGATTATGTGGTGGGGATTAGGATTGTAAGGCCTGCAGGTTCTGAAGATGGATATGCTAAGGTTGAGATCCTAAATGAACAGCATCAAGATTTAAGTGCAGCCAAAGTATCACTCGGTGTGCTGGGAGTTATTTCACAGATTACTCTAAAACTAGAACCCCTCTTCAAGCGATCCATCACTTATGTGGAAAAAGATGATTCAGATTTGGGAGACCAAGCTGCTGCTTTTGGAGATGCACATGAGTTTGGAGATATACTGTGGTACCCAAGTCAACGCAAGGTTCTCTATCGTGTTGATGATCGTGTCCCAACTAATACATCGGGAAATGGTCTTTACGACATTATTTCTTTCCGTCCCACTCCTTCAAATACGTCGGCTTTCATAAGAACCAGAGAGGATATTCAAGAATCCACTAAAGATGCCAATGGAAAGTGCATAGATGCAACTACCACAACGGACACCTTCATCACCGAAGCTTATGGTCTTACTAACAATGGTATAATCTTCACTGGATACCCAGTAATTGGATTTCAAAACCGCCTTCAATCATCTGGGTCATGCTTGGATAGTCCTCAAGACGCATTGAACACAACATGTGCCTGGGATCCGAGGGTGAAAGGCTTGTTCTTTTACCAAACCGCATTTAGCATTAAGTTGTCCTTTGTAAAAAGCTTTATTGAAGATGTGCAAAAGCTAGTTGAATTGGAGCCAAAGGGATTATGTGTCTTAGGGCTTTACAATGGAATGTTAATGCGCTATGTCACGGCTTCAAGTGCCTACTTGGGGCACCAAGAGGATGCTTTAGACATTGATATCACCTACTACCGTAGCAAAGACCCAATGGCTCCCAGGCTTTATGAAGACATTCTTGAAGAGATTGAACAAGTTGGGATTTTCAAATATGGAGGGCTACCTCATTGGGGTAAGAATAGAAACTTGGCGTTTAAAGGAGTCATCAAGAAGTACAAAGATGCAAAGAAATTTTTGAAGGTTAAAGAGAAGTATGATTCGCATGGGCTTTTCTCAAATACGTGGACAGACCAAGTGTTGGGGCTAAAAGATGGAGTGACAATACTGAAGGATGGGTGTGCATTAGAAGGTTTGTGTATTTGCTCCCAGGATAGTCATTGCAATCCAAGCAAAGGTTACTATTGCAGGCCAGGCAAAGTTTACAAGAAAGCAAGGGTTTGTACTCATTTGAAATGA
>Glyma16g02250.1 sequence type=predicted peptide gene model=Glyma16g02250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFLSLTMMSNIAFRLTLVFLLFSAVLSTPPEDPIKCATSENTTCTITNSYGAFPDRSICKAAQVLYPTTEQELVSVVASATRNKTKMKVATRFSHSIPKLVCPEGENGLLISTKYLNKILKVDVETRTMTVESGVTLQQLINEAAKVGLALPYAPYWWGLTIGGLMGTGAHGSTLRGKGSAVHDYVVGIRIVRPAGSEDGYAKVEILNEQHQDLSAAKVSLGVLGVISQITLKLEPLFKRSITYVEKDDSDLGDQAAAFGDAHEFGDILWYPSQRKVLYRVDDRVPTNTSGNGLYDIISFRPTPSNTSAFIRTREDIQESTKDANGKCIDATTTTDTFITEAYGLTNNGIIFTGYPVIGFQNRLQSSGSCLDSPQDALNTTCAWDPRVKGLFFYQTAFSIKLSFVKSFIEDVQKLVELEPKGLCVLGLYNGMLMRYVTASSAYLGHQEDALDIDITYYRSKDPMAPRLYEDILEEIEQVGIFKYGGLPHWGKNRNLAFKGVIKKYKDAKKFLKVKEKYDSHGLFSNTWTDQVLGLKDGVTILKDGCALEGLCICSQDSHCNPSKGYYCRPGKVYKKARVCTHLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
