Glyma16g02240 - SoyBase

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Report for Sequence Feature Glyma16g02240

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1759053
stop:	1762330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00820	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 17 \| chr4:349300-351307 FORWARD LENGTH=534	SoyBase	E_val: 1.00E-176	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF84	Panther	MYOSIN VIII	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_B9SVG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVG1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AD79	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AD79 related cluster n=1 Tax=unknown RepID=UPI000233AD79	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g02240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02240

Paralog	Evidence	Comments
Glyma07g05680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g019700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g02240

Limit To All Plant Sequences

>Glyma16g02240.1   sequence type=CDS   gene model=Glyma16g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGGGAAGTGGTAGTTCGTGGTTAACCGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGAAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAGAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCACGAAGGAGTGAACAACAACAGCAACCACACTACTCAACAAAAGGTGCAGCATGATGTGGCAGCAAGTGGGGGTGGTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCTGTGGCCATGGCCACCGCAGAAGCCGCCATGGCCACCGCTCAGGCGGCGGCGGAGGTGGCAAGGTTGTCCAAACCTGCTAGCCATGCCAGGGAGCATTTTGCTGCTGTTGTGATCCAAACTGCTTTCAGAGGGTATCTTGCTAGAAGAGCGCTTCGTGCACTGAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGGTGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTTCTTGACCAACGCATAAGGTCTTCACTTGAAGGTAGTAGAAAATCCACTTTCAGTGACACTGCTAGTGTTTGGGACTCACGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCAAGAGAGGGAAGCAGCATTGCAGATGACTGGGATGAAAGGCATCATTCAGTTGAAGAAGTGAAGGCCATGTTGATGCAGAGGAAGGAAGCTGCTGCAATGAAGAGGGACAAGACCTTATCTCAAGCCTTTTCCGAACAGATTTGGAGGAATGGTAGAACATCATCAATTGGAAATGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGACCCCATTAAGACTGTGGAAATTGACACATCTCAGCCTTATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATACAACCCAAACCATCACCAACCACAAAGGCATTCCATTGCTTCCCCACTCCATAGATCTCACCAAAATGGATCCTCCCTTCACCAATCCCCTGCCACCCCTTCTCCTGCCAAATCAAGGCCTATCCAAGTCCGGTCGGCTAGTCCACGTTGCGTTAGAGACGACAGAAGCTACCACACCTCCCAAACACCAAGCTTGAGGTCTAATTACCACTACACAGGAAACTTGTACCAAAATGGAAGGATTGTTTCAACTGGAACTAGTAGTGGTGGTGCTACTGCTACATTGCCTAATTACATGGCGGCAACTGAGTCTGCAAAGGCTCGAATTCGGTCGCAAAGCGCGCCGAGGCAGAGGCCATCCACACCAGAGAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGACCCTTATGGTGTGGGAGTGAGTTATGGAAACTATGGACATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGAGGGTTAGAGCAACAATCAAACTACTCCTCTTGCTACACTGAGAGTATTGGTGGTGGTGGTGGTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGGAGGTGGTTGAGATGA

Predicted protein sequences of Glyma16g02240

Limit To All Plant Sequences

>Glyma16g02240.1   sequence type=predicted peptide   gene model=Glyma16g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSHEGVNNNSNHTTQQKVQHDVAASGGGSRTDQDQKHALAVAMATAEAAMATAQAAAEVARLSKPASHAREHFAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLEGSRKSTFSDTASVWDSRYLQDISDRKSISREGSSIADDWDERHHSVEEVKAMLMQRKEAAAMKRDKTLSQAFSEQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIASPLHRSHQNGSSLHQSPATPSPAKSRPIQVRSASPRCVRDDRSYHTSQTPSLRSNYHYTGNLYQNGRIVSTGTSSGGATATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYGVGVSYGNYGHSLRSPSFKSVSGSHFGGLEQQSNYSSCYTESIGGGGGEVSPSSTGDLRRWLR*

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