Glyma16g02020 - SoyBase

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Report for Sequence Feature Glyma16g02020

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1559778
stop:	1563230
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g02020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61950	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:22939661-22941332 FORWARD LENGTH=358	SoyBase	E_val: 2.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11534	Panther	MYOGENIC FACTOR	JGI		ISS
PTHR11534:SF7	Panther	MYOGENIC FACTOR MYF-5	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B9RNL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNL4_RICCO	SoyBase	E_val: 9.00E-131	ISS
UniRef100_I1MKB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKB7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g02020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g02020

Paralog	Evidence	Comments
Glyma07g05500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g02020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g017700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g02020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g02020

Limit To All Plant Sequences

>Glyma16g02020.2   sequence type=CDS   gene model=Glyma16g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCTTTGGGAGTGAATTGTTTGGACCATGTTCTGGTGGATGAAGAAAGCCTGAGACTAGAAGAGGAAGAACATCTTCTGATATCAAGCTTAGAGGACAACATGCCATTCCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAGACAAACTTTCAAACACTTCTGAGGCTGCAGCACAAGAAGAATCCATGGGAGGGAATAGCCTATTTTCCAAGAATGGAAGCACAACAAGTGCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTCCGAGATGCAGTACTCACCAGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCAGTTTCATGTTTTGAGAAGAAAGTGAACTATGAGTGCAACCAGGAACCACAGAAAGTTTCACAAACATGCCCCAAATCTCAGCCAACAGCAACAAAGGAAAGGAGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACTCACATTGCTGTTGAACGCAACCGGCGACGCCAAATGAATGACCACCTCAGTGTTCTTAGGTCCCTCATGCCACCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGAGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTCGAGGCACAAAAAAGGACGAGAAAGAATGAAGAGGGTGGTGGTGGTGGTGGTTCTTCTTCTTCTTCCTCTTCCACTATGTTGTGTAAGCCTCCACCACCACCATTATTATTATTATCATCACCACATGGCTATGGAATGAGGTCATCACCTAGTGATGAAGTGAACTGTGGAGATGAAGTGAAGGCAGAAAACAAGTCAGAGGCAGCAGACATAAAAGTGACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAGCCAGGGCAATTGTTAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACTTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTATGTTCAGCAAGTGACATTGCAGAAACGGTTCATCAAATATTCAGCTTCATTAATGGTGTAGCTAGAGACCACTAG

Predicted protein sequences of Glyma16g02020

Limit To All Plant Sequences

>Glyma16g02020.2   sequence type=predicted peptide   gene model=Glyma16g02020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERLQGPLNSCFFGDPLGVNCLDHVLVDEESLRLEEEEHLLISSLEDNMPFLQMLQSVESPQFFPLKETNFQTLLRLQHKKNPWEGIAYFPRMEAQQVQAALELESCVTHDMSEMQYSPVKSESNELQHPLSVSCFEKKVNYECNQEPQKVSQTCPKSQPTATKERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRTRKNEEGGGGGGSSSSSSSTMLCKPPPPPLLLLSSPHGYGMRSSPSDEVNCGDEVKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLLKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEDCKLCSASDIAETVHQIFSFINGVARDH*

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