Glyma16g01960 - SoyBase

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Report for Sequence Feature Glyma16g01960

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1495641
stop:	1497447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g01960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01050	AT	Annotation by Michelle Graham. TAIR10: pyrophosphorylase 1 \| chr1:31382-32670 REVERSE LENGTH=212	SoyBase	E_val: 1.00E-78	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004427	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic diphosphatase activity	SoyBase	N/A	ISS
PTHR10286	Panther	INORGANIC PYROPHOSPHATASE	JGI		ISS
PF00719	PFAM	Inorganic pyrophosphatase	JGI		ISS
UniRef100_Q93V56	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inorganic pyrophosphatase 1 n=2 Tax=Arabidopsis RepID=Q93V56_ARATH	SoyBase	E_val: 5.00E-76	ISS
UniRef100_UPI000233B7B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B7B9 related cluster n=1 Tax=unknown RepID=UPI000233B7B9	SoyBase	E_val: 2.00E-109	ISS

Expression Patterns of Glyma16g01960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g01960 not represented in the dataset	Glyma16g01960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g01960

Paralog	Evidence	Comments
Glyma07g05390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g01960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma16g01960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g01960

Limit To All Plant Sequences

>Glyma16g01960.1   sequence type=CDS   gene model=Glyma16g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGATGAGAATGGCGAAGAACCTCGAGAAAACCGTCCGGTTCCACGCTTGAATGAAAGGATTCTTTCATCTCTGTCTAGGAGATCAGTTGCTGCTCACCCTTGGCATGATCTTGAAATTGGACCTGGAGCGCCTATGATTTTCAATTGTGAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGGGGGAGAAGGATGATAAAATTATTGCGGTATGTGCTGATGATCCAGAATTTAAGCACTATACTGACTTAACAGAACTTCCACCTCATCGCCTCATGGAGATCCGCCGCTTCTTTGAAGATTACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCTGTTGAATCCATCCAGTACTCAATGGATCTTTATGCGGAGTATATTCTGCATACCTTGAGGCGATAG

Predicted protein sequences of Glyma16g01960

Limit To All Plant Sequences

>Glyma16g01960.1   sequence type=predicted peptide   gene model=Glyma16g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDENGEEPRENRPVPRLNERILSSLSRRSVAAHPWHDLEIGPGAPMIFNCEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFKHYTDLTELPPHRLMEIRRFFEDYKKNENKEVAVNDFLPASTAVESIQYSMDLYAEYILHTLRR*

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