Glyma16g01940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g01940

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1443746
stop:	1447223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g01940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35580	AT	Annotation by Michelle Graham. TAIR10: NAC transcription factor-like 9 \| chr4:16888534-16890744 REVERSE LENGTH=534	SoyBase	E_val: 2.00E-40	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_G7ZZ26	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7ZZ26_MEDTR	SoyBase	E_val: 2.00E-110	ISS
UniRef100_I1MKA2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MKA2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g01940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g01940

Paralog	Evidence	Comments
Glyma07g05360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g01940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g016700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g01940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g01940

Limit To All Plant Sequences

>Glyma16g01940.1   sequence type=CDS   gene model=Glyma16g01940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGATATTGTAGGACTCGGTTTTCGTCCAACAGAACAAGAGCTTGTCAACTTTTACCTCAAACACAAGTTGCTCGGCGATGATCCCCGTGTCCACGTCATCCCTGTCATTGATCTTTGCGATGTGGAACCTTGGAATGTACCAGTGATATTAGCATCGTCATCAGCTATACGATTTGGTGACCCAGATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTACTTGAAAAGCAAAAGGTTTAACAGGACAACCAAGTGTGGATTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTGATAACACTGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAACCAGAGGACTTTTGTTTTATGTTGCTTGATGAAGAAACCTGGGAAAACAACTGAAGGCGGAACTGATCCCCTGATCTGTGATGAAGGGGAGCCCAGCAGAAGCATGATTTCTGACTATGAAAATCAGCCAACAGCAGAAGGAATTGCATCTGAAGGTACTTTTACAGGAATAGAGGCAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCCCCAATACAACAGTCTCTGACTCTTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAACATTATGCAGACTCCATTTGAAACTACAAAGGAAGATGAATTCCTAAATTTAATCTTAGCCGATGAAAGTATAGTGATCAATGAAGAAAATAAGCATGATTTTGTCAATAGCTCTACCCAATCAGAGTCATTGAAAAGGGTATACTGTGAAAGCAGTGATACAGATGCTGAAGTCATCTCTAAACTGGATGACAATATTGTGGATATTTCAACAGCATGTAATGATTATCCTAATTCAGATGAATACTATTCATCAAAAAGGTTTAAATCATCACATGATGCTGTCCATGGTGGAATATGTTTTCTACCTTCTAACCTTGAAGCAAACCAAGAGAAAAACGAGAGTATGTTTCAAGATAGTTTCTGGGGAGCAGAGACATCATCTTGTGACTCGACACTAGATAAACCTTTGGAGATCAATTATATTGATATTTCTAGTTCTCCTTTCACTCCATGGAGATGA

Predicted protein sequences of Glyma16g01940

Limit To All Plant Sequences

>Glyma16g01940.1   sequence type=predicted peptide   gene model=Glyma16g01940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDDIVGLGFRPTEQELVNFYLKHKLLGDDPRVHVIPVIDLCDVEPWNVPVILASSSAIRFGDPDWFFFSPVDFKYLKSKRFNRTTKCGFWKATGKDRDIRTGDTDNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHAVTFHENQRTFVLCCLMKKPGKTTEGGTDPLICDEGEPSRSMISDYENQPTAEGIASEGTFTGIEAIFQATPWAENCFSPIQQSLTLIEQEGASFPNYAFNNAYFRNEDNIMQTPFETTKEDEFLNLILADESIVINEENKHDFVNSSTQSESLKRVYCESSDTDAEVISKLDDNIVDISTACNDYPNSDEYYSSKRFKSSHDAVHGGICFLPSNLEANQEKNESMFQDSFWGAETSSCDSTLDKPLEINYIDISSSPFTPWR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain