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Report for Sequence Feature Glyma16g01911

Feature Type:gene_model
Chromosome:Gm16
Start:1423289
stop:1426881
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g01911
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49530AT Annotation by Michelle Graham. TAIR10: NAC domain containing protein 62 | chr3:18362639-18364717 REVERSE LENGTH=469 SoyBaseE_val: 6.00E-53ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0070417GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to cold SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_G7ZZI3UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7ZZI3_MEDTR SoyBaseE_val: 2.00E-87ISS
UniRef100_I1MK99UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MK99_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g01911
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g01911 not represented in the dataset
Glyma16g01911 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g01911
ParalogEvidenceComments
Glyma07g05351 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g01911 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma16g01911
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g01911
>Glyma16g01911.1   sequence type=CDS   gene model=Glyma16g01911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGTAGGATTCAGATTCCGTCCCACAGATGAAGAGCTTGTCGACTATTACCTCAAACACAAGCTTCTGGCTGATGATTTCCCTGTCCACATCATCCCTGAAATCGACCTTTGCAAGGTGGAACCTTGGGACGTACCAGGAAGATCAGTGATCAAATCCGATGACCCAGAATGGTTTTTCTTCAGTCCTGTGGATTACAAGTACTTGAAGAGTAAAAGGTTTAACAGGACAACCAAGCGTGGCTTCTGGAAAGCCACTGGGAATGACCGGAAAATAAGGATACCGGGCACCAGCAATGTCATTGGGACTAAGAAGACTCTTGTTTTCCACCAAGGCCGTGTTCCCCGTGGTGCCAAGACCAACTGGGTTATTCATGAATACCATGCTGTTACCTCCCATGAAAGCCAGAGGGCTTTTGTTTTGTGCCGCTTGATGAAGAAAGCTGAGAAAAAAAATGAAGGGGGAATTGAGGCACCGTCTTTTGATGAAGGGGAGCCCAGTATACACATGGTTTCTGACTATGGAAATCCGGCAAGAGCAGAAGGCATTGCATCTGTAGATATTATTCCTGGAGTAGATATGGATGAAATCTTTCGGGCAGTGGATCAAGCTGAGAAATTCTCCCCCCCAGTACAACAGTCTCCAACTGGCATTGGGCTGGAAGATTTTTTCCCAAACTCTCCATTGTTCAATGCCCGTTTTGGAAGTGAAAACATCAATATGCAAACTTCACTTGAAGTTACGGATGACGAAGATGAGTTGGTAAATTCATTTTTGGTTTATGATGAAGAATTTGTTATCAATGAAGAAAGAAGACACTGTTTTGTCAATAGTTCCACCCAACCAAAGTCATTGAGAAGGCGGATAAGGCCCAACAGCTTATCAACTCAGAGACGAACGGCGGCAATACCCTCTTTTATTCCCTCGAGAGGTGGCGTCCGGGGTACAGGGTATCTAATCGGATCGTGTGGCTTCAATCAAAAGTTTTACCCAGCGGTCCTTGTGGCCAAACTCGGGATCGGTTTGAATCAGTGGACAAGAGCCCAAATCCTGATAATTGCAGACCTAACGCAGGTGGCGCAGCAAGGCACTCTCAGGGCCCTACTTTGA
Predicted protein sequences of Glyma16g01911
>Glyma16g01911.1   sequence type=predicted peptide   gene model=Glyma16g01911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVGFRFRPTDEELVDYYLKHKLLADDFPVHIIPEIDLCKVEPWDVPGRSVIKSDDPEWFFFSPVDYKYLKSKRFNRTTKRGFWKATGNDRKIRIPGTSNVIGTKKTLVFHQGRVPRGAKTNWVIHEYHAVTSHESQRAFVLCRLMKKAEKKNEGGIEAPSFDEGEPSIHMVSDYGNPARAEGIASVDIIPGVDMDEIFRAVDQAEKFSPPVQQSPTGIGLEDFFPNSPLFNARFGSENINMQTSLEVTDDEDELVNSFLVYDEEFVINEERRHCFVNSSTQPKSLRRRIRPNSLSTQRRTAAIPSFIPSRGGVRGTGYLIGSCGFNQKFYPAVLVAKLGIGLNQWTRAQILIIADLTQVAQQGTLRALL*






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