Glyma16g01890 - SoyBase

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Report for Sequence Feature Glyma16g01890

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1413545
stop:	1417828
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g01890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02270	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding endonuclease/exonuclease/phosphatase family \| chr1:443301-446197 REVERSE LENGTH=484	SoyBase	E_val: 0	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG2338	KOG	Transcriptional effector CCR4-related protein	JGI		ISS
PTHR12121	Panther	CARBON CATABOLITE REPRESSOR PROTEIN 4	JGI		ISS
PTHR12121:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_G7ZZ41	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein, putative n=1 Tax=Medicago truncatula RepID=G7ZZ41_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BBD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BBD2 related cluster n=1 Tax=unknown RepID=UPI000233BBD2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g01890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g01890

Paralog	Evidence	Comments
Glyma07g05340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g01890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g016300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g01890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g01890

Limit To All Plant Sequences

>Glyma16g01890.4   sequence type=transcript   gene model=Glyma16g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCATATCACATGAACGAGCACACTGCTGTAACGCTGAAATCCCCAACTTGTACTACTGTCCTTGTCCTGTCTCCTTGTTTCTTCTACAATATATATCAAATCCCTCTCTCTCTCTCTCTCTATATATATATATATATATATAATTGCTCACCACATCACTAAAACCACAAGAGAGATAAAAGGGCGGTTAAGAGATATAAGAAGAAGAAGCTAGATTATGTTCCATTCACTCACATAATAATCCGTGACCCATTTCAGATTTCGTCTTAACGCACATAAATTCAGGTTCAAAATCTCACCTTTGTTGATTTTGGCGAGGATTTTGAGAATGGTTGTGGCTGGGGGTGCTAAGTTCAATTTGAGAAGAGGCAATGGTTCTTCTCATAATGTTGTCAATGGCTATAGCAGTGATGGAGATCTTTGCAGAATTAGCAAAAGTGGGTGTTTTTCGTCGGTGGCTGAGGTGGATAGAGATCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGACCCACAGAACCAGGGCCTGCGAGAAAGTGACTTCAGAGCATTCTGGTTGGCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTTCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTAACATGTATGAGGAGAGACTTGGGGATGCTGGCTACAATCTCTTCAAGCTCGCGCGAACCAACAATCGCGGAGATGGTCTGCTGATTGCTATACGTAAAGAATGTCTAAGAGTTATGGATTATAAAGAGTTGCTTTTAAACGATTGTGGCGATCGCGTTGCTCAGTTGTTACATGTTCAGTCAGCTACCCCCTTTGTACAAAACCCAAAAGGCAGTGTTCCTCAAGAGTTTCTGATTGTGAACACCCACCTGTTATTTCCTCATGATTCAAGTCTTTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGTGGGCATGTTTACAAGTTCCTAAGGTCACAGGGGTTTGTATCATCATATGACATTGCTAATCAATACAGTGACAGTTATGCAGATTCTCACAAGTGGGTTAGTCACCGAAATCATAGGGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTAAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGAAAAGCATCGTTATCTGAAGATGATGCATTTGCCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTTTAGCTTCTCCGAAGCACTTCGGCAGGTGAAGTTAATTGGTGTGCCTTATGGACTACGTTTTCAACAGTTGCAAGATCTATGGAATCAAGCAGATGCTGATGGAAATGGTGTCATAGACTTTGAAGAATTCAAGAAAATATGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATCTGAATGGTTGCACGGAAGATTGTAACACAGAACAGGAGCAAGAAGCTATTGGTTTTAAGGTGAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCTGCCTCACAAAACTGAATGTACTTCATGGCACTAATAGTCTTAGCCCACAGAAAAATATTCAATTTTGGGACCAGTTTGGTGTAGGGGTAAACTAAAGTGATACTTTTTTTCACTTTCATTTTTAGTCCCCTACCAAACATGTCATGCCATAATTAGTGATTAGTCTGTCTTGTATATGTGTTTGGAGTCAAATTAAAGTAGTGTTGTGCTGTAATCAGTTTTGGTAAGCCCTGGCCATGTTTTTTTCTCTGGTAATGGGATAACAATGTAAAGATATTTTTGCAATGTAGAAGTGGATGTGCATATTATGTATTTCCTTCTCACTGTTTGAATCCATTGATTTTTTGCTACAAAATTCTCCTTGTGATTGCTG

Coding sequences of Glyma16g01890

Limit To All Plant Sequences

>Glyma16g01890.3   sequence type=CDS   gene model=Glyma16g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGGCTGGGGGTGCTAAGTTCAATTTGAGAAGAGGCAATGGTTCTTCTCATAATGTTGTCAATGGCTATAGCAGTGATGGAGATCTTTGCAGAATTAGCAAAAGTGGGTGTTTTTCGTCGGTGGCTGAGGTGGATAGAGATCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGACCCACAGAACCAGGGCCTGCGAGAAAGTGACTTCAGAGCATTCTGGTTGGCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTTCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTAACATGTATGAGGAGAGACTTGGGGATGCTGGCTACAATCTCTTCAAGCTCGCGCGAACCAACAATCGCGGAGATGGTCTGCTGATTGCTATACGTAAAGAATGTCTAAGAGTTATGGATTATAAAGAGTTGCTTTTAAACGATTGTGGCGATCGCGTTGCTCAGTTGTTACATGTTCAGTCAGCTACCCCCTTTGTACAAAACCCAAAAGGCAGTGTTCCTCAAGAGTTTCTGATTGTGAACACCCACCTGTTATTTCCTCATGATTCAAGTCTTTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGTGGGCATGTTTACAAGTTCCTAAGGTCACAGGGGTTTGTATCATCATATGACATTGCTAATCAATACAGTGACAGTTATGCAGATTCTCACAAGTGGGTTAGTCACCGAAATCATAGGGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTAAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGAAAAGCATCGTTATCTGAAGATGATGCATTTGCCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTTTAGCTTCTCCGAAGCACTTCGGCAGGTGAAGTTAATTGGTGTGCCTTATGGACTACGTTTTCAACAGTTGCAAGATCTATGGAATCAAGCAGATGCTGATGGAAATGGTGTCATAGACTTTGAAGAATTCAAGCAGAAAATATGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATCTGAATGGTTGCACGGAAGATTGTAACACAGAACAGGAGCAAGAAGCTATTGGTTTTAAGGTGAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCTGCCTCACAAAACTGA

>Glyma16g01890.4   sequence type=CDS   gene model=Glyma16g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGGCTGGGGGTGCTAAGTTCAATTTGAGAAGAGGCAATGGTTCTTCTCATAATGTTGTCAATGGCTATAGCAGTGATGGAGATCTTTGCAGAATTAGCAAAAGTGGGTGTTTTTCGTCGGTGGCTGAGGTGGATAGAGATCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGACCCACAGAACCAGGGCCTGCGAGAAAGTGACTTCAGAGCATTCTGGTTGGCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTTCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTAACATGTATGAGGAGAGACTTGGGGATGCTGGCTACAATCTCTTCAAGCTCGCGCGAACCAACAATCGCGGAGATGGTCTGCTGATTGCTATACGTAAAGAATGTCTAAGAGTTATGGATTATAAAGAGTTGCTTTTAAACGATTGTGGCGATCGCGTTGCTCAGTTGTTACATGTTCAGTCAGCTACCCCCTTTGTACAAAACCCAAAAGGCAGTGTTCCTCAAGAGTTTCTGATTGTGAACACCCACCTGTTATTTCCTCATGATTCAAGTCTTTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGTGGGCATGTTTACAAGTTCCTAAGGTCACAGGGGTTTGTATCATCATATGACATTGCTAATCAATACAGTGACAGTTATGCAGATTCTCACAAGTGGGTTAGTCACCGAAATCATAGGGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTAAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGAAAAGCATCGTTATCTGAAGATGATGCATTTGCCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTTTAGCTTCTCCGAAGCACTTCGGCAGGTGAAGTTAATTGGTGTGCCTTATGGACTACGTTTTCAACAGTTGCAAGATCTATGGAATCAAGCAGATGCTGATGGAAATGGTGTCATAGACTTTGAAGAATTCAAGAAAATATGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATCTGAATGGTTGCACGGAAGATTGTAACACAGAACAGGAGCAAGAAGCTATTGGTTTTAAGGTGAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCTGCCTCACAAAACTGA

Predicted protein sequences of Glyma16g01890

Limit To All Plant Sequences

>Glyma16g01890.3   sequence type=predicted peptide   gene model=Glyma16g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVAGGAKFNLRRGNGSSHNVVNGYSSDGDLCRISKSGCFSSVAEVDRDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFRAFWLARNERILDCLLSESSSIMCLQEFWVGNEELVNMYEERLGDAGYNLFKLARTNNRGDGLLIAIRKECLRVMDYKELLLNDCGDRVAQLLHVQSATPFVQNPKGSVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADSHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASLSEDDAFAFLKGDNYADSVTYFSFSEALRQVKLIGVPYGLRFQQLQDLWNQADADGNGVIDFEEFKQKIWNSTCPEHVLENLNGCTEDCNTEQEQEAIGFKVKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMRCSASQN*

>Glyma16g01890.4   sequence type=predicted peptide   gene model=Glyma16g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVAGGAKFNLRRGNGSSHNVVNGYSSDGDLCRISKSGCFSSVAEVDRDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFRAFWLARNERILDCLLSESSSIMCLQEFWVGNEELVNMYEERLGDAGYNLFKLARTNNRGDGLLIAIRKECLRVMDYKELLLNDCGDRVAQLLHVQSATPFVQNPKGSVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADSHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASLSEDDAFAFLKGDNYADSVTYFSFSEALRQVKLIGVPYGLRFQQLQDLWNQADADGNGVIDFEEFKKIWNSTCPEHVLENLNGCTEDCNTEQEQEAIGFKVKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMRCSASQN*

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