SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46890 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1295) | chr2:19266879-19268134 REVERSE LENGTH=322 | SoyBase | E_val: 2.00E-157 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| KOG4650 | KOG | Predicted steroid reductase | JGI | ISS | |
| PF06966 | PFAM | Protein of unknown function (DUF1295) | JGI | ISS | |
| UniRef100_D4HU06 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase n=1 Tax=Arabidopsis halleri subsp. halleri RepID=D4HU06_ARAHH | SoyBase | E_val: 7.00E-155 | ISS |
| UniRef100_I1MK93 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MK93_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g01850 not represented in the dataset |
Glyma16g01850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g05300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g015900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g01850.1 sequence type=CDS gene model=Glyma16g01850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGTGGCCGCAATTTGAAGAACGCTGTGATTGCATTCTTGGTTCCTCTTCCCTCCATCTTCTTCTACCTCTCATTCCTCAACCACTACGACTCAGCAAAATCCCCATCTTTTTGGTCAACTCTATGGTCATGGTGCTATCACCACCCTCTTCTATTAGCCAACGCTCTCTTCTTCCTCAACGTCAATGTCCTCTTCTGGCTCATAGGCCTAATACAATCCAGCCACTGGATGATCGACCCCTATTGGACTGTGATACCTGTGATGCTTGTTCACTACTATGCCACTCATCCTTTGGCTCCCTATGATTTGTGGAGGTCCAAGATCGTGATTTTATTGACTTGGGTGTGGAGTGTTAGGCTCACTCACAACTATTTCAGGAGAGAGAGGTGGCAGTGGGGTGCCAGGGAAGATTGGCGTTTCACTGAGATGAGTCAACAGTATGGAAAGCAATGGTGGTGGGTTTCATTCTTTGCTGTCTATGTCTCACAACAGATGTTTTTGATTGCACTGTCACTTCCCTTGTATGCTGTCCATACTGTCAATCAGCCTTTGAACATGTGGGACTTGGTGGCTACTGTTGTCTGTTTATGTGGCATTGTTATAGCATATTTTGCTGATACACAGCTCTATGAGTTTGTGAGTAGAAACAACAAGCTGAAGGGGCTTGGTAAACCCGTGGTTTCGGTCCTTGACAGTGGCTTGTGGTATTACTGCCGACATCCGAATTACTTTGGCGAGCAGCTGTGGTGGTGGGGGCTGGTTGTGTTTGCATGGAGCCTGGGAGTGGGATGGACCTTCATTGGAGCTTTTGTTAATACTATGTGTTTGGCTTATGTGACTAGGCTTGTGGAGGACCGAATGTTGAAACAAGAAAGTAGAGCAGAAGCATTTAGGGTGTATCAGAATACAACTTCTGTGTGGATACCTTGGTTCAAGTCCTCTCCTTCAGGGGTTAAAAATAAGAATGCTTGA
>Glyma16g01850.1 sequence type=predicted peptide gene model=Glyma16g01850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASGRNLKNAVIAFLVPLPSIFFYLSFLNHYDSAKSPSFWSTLWSWCYHHPLLLANALFFLNVNVLFWLIGLIQSSHWMIDPYWTVIPVMLVHYYATHPLAPYDLWRSKIVILLTWVWSVRLTHNYFRRERWQWGAREDWRFTEMSQQYGKQWWWVSFFAVYVSQQMFLIALSLPLYAVHTVNQPLNMWDLVATVVCLCGIVIAYFADTQLYEFVSRNNKLKGLGKPVVSVLDSGLWYYCRHPNYFGEQLWWWGLVVFAWSLGVGWTFIGAFVNTMCLAYVTRLVEDRMLKQESRAEAFRVYQNTTSVWIPWFKSSPSGVKNKNA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
