SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g01820

Feature Type:gene_model
Chromosome:Gm16
Start:1357846
stop:1360453
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g01820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53760AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:20 SoyBaseE_val: 3.00E-112ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4539 KOG Uncharacterized conserved protein JGI ISS
PF10173PFAM Uncharacterised conserved protein (DUF2343) JGI ISS
UniRef100_G7L9X4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-4 n=1 Tax=Medicago truncatula RepID=G7L9X4_MEDTR SoyBaseE_val: 1.00E-132ISS
UniRef100_I1MK90UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MK90_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g01820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g01820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g015600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g01820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g01820
>Glyma16g01820.1   sequence type=CDS   gene model=Glyma16g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGCCAAATTGCTCGTGTTCCCATTACGTGGCAGGAACTGGTGCTTCTCCAGAACCATCGATCATTCTCTTCTCTCCGCTTCCCATGCTTCCTCTCAATCATCCCCTTCAACCCTCAAAGGCTTATGGACCAACATCAACGTCCGTGATAAACCCCTTAACGCCAAAGCCGAGCTCTTTGTCGATTACATCGCCAACAAGATGAATAGCGTTTGGATTGGCTTGGAGAAAGCGCCGGAGGGGTCCTTCAAGAATAAGATTCATGGGTTGGGCTTGCGGCTCTTGTCGCGGGTTAAGCCCTCGGAGATATTTTTGAAGTCTATATCGAAGGAAATCACTAGTGTTGAAATCATCTATCCATCAAGTTTGAATGCTCAACTTGTTCGTCGAAGACTGAGACATATTGCTGTGAGGGGAGCAATTATCCACAGGAAATACTTCTATGGTTCAGTTTTGTTAATCCCATTGAGTGCAGCATGTGGCATTTTACCTTTGCCTAATGTCCCGTTCTTCTGGGTTTTATTTCGCACTTATTCTCACTGGAGAGCCCTGCAGGGAAGTGAGAAATTGCTCCAACTAGTCTCAGATGGCAACAAAACTTCAAACACTTACACACAAACTGAGCATAAGAACTCTAAAAGTCAAAGCCATAGTTCGAATGAACCCTGTTGGGTGTTGAAGCCCTCCAAAGAACTAGATAATCTTGTCCGTCTAGAAGGTCTTAGTCAACATGCTATCGTAAACATTTGCAAGATCTATGACTTGAACACCAAAGATGTTATAAAATACCAGAAGTCTATTTTTTAA
Predicted protein sequences of Glyma16g01820
>Glyma16g01820.1   sequence type=predicted peptide   gene model=Glyma16g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRAKLLVFPLRGRNWCFSRTIDHSLLSASHASSQSSPSTLKGLWTNINVRDKPLNAKAELFVDYIANKMNSVWIGLEKAPEGSFKNKIHGLGLRLLSRVKPSEIFLKSISKEITSVEIIYPSSLNAQLVRRRLRHIAVRGAIIHRKYFYGSVLLIPLSAACGILPLPNVPFFWVLFRTYSHWRALQGSEKLLQLVSDGNKTSNTYTQTEHKNSKSQSHSSNEPCWVLKPSKELDNLVRLEGLSQHAIVNICKIYDLNTKDVIKYQKSIF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo