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Report for Sequence Feature Glyma16g01810

Feature Type:gene_model
Chromosome:Gm16
Start:1351551
stop:1355524
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g01810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53750AT Annotation by Michelle Graham. TAIR10: regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426 SoyBaseE_val: 0ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0008540GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0729 KOG 26S proteasome regulatory complex, ATPase RPT1 JGI ISS
PTHR23073Panther 26S PROTEASE REGULATORY SUBUNIT JGI ISS
PTHR23073:SF13Panther 26S PROTEASE REGULATORY SUBUNIT 7 JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_Q41365UniRef Annotation by Michelle Graham. Most informative UniRef hit: 26S protease regulatory subunit 7 n=1 Tax=Spinacia oleracea RepID=PRS7_SPIOL SoyBaseE_val: 0ISS
UniRef100_UPI000189D0C1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D0C1 related cluster n=1 Tax=unknown RepID=UPI000189D0C1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g01810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g01810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g015500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g01810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g01810
>Glyma16g01810.1   sequence type=CDS   gene model=Glyma16g01810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTGAACACGAAGACGATCTCAAAGACGAGAAGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACGGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAAGATATGGCCAAGAAAGTGAATGACTTATGTGGTATCAAGGAGTCTGATACTGGATTAGCAGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAAGAGCAGCCTCTTCAGGTGGCACGATGCACAAAGATCATAAATCCAAACTCTGAAGATGCCAAATATGTTATCAATGTGAAGCAGATAGCAAAGTTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATTGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCGAAAATTGATCCAAGTGTAACCATGATGACGGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATTGATCCTCCAAAGGGTGTTCTTTGTTATGGTCCCCCAGGAACTGGGAAAACACTTTTAGCCAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGGCCTGACACTCTAGATCCTGCACTACTACGGCCTGGGCGGTTGGACCGTAAAGTTGAATTCGGCCTTCCTGACTTAGAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATCCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTGCCCGGAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTAAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCAACTCCCAAGTATATGGTCTATAACTGA
Predicted protein sequences of Glyma16g01810
>Glyma16g01810.1   sequence type=predicted peptide   gene model=Glyma16g01810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN*






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