Glyma16g01610 - SoyBase

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Report for Sequence Feature Glyma16g01610

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1181410
stop:	1183204
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g01610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14280	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:4761654-4762286 REVERSE LENGTH=141	SoyBase	E_val: 4.00E-15	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6T3A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3A5_SOYBN	SoyBase	E_val: 2.00E-98	ISS
UniRef100_Q94HC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q94HC7_ORYSJ	SoyBase	E_val: 4.00E-11	ISS

Expression Patterns of Glyma16g01610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g01610

Paralog	Evidence	Comments
Glyma07g05110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g01610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g013600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g01610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g01610

Limit To All Plant Sequences

>Glyma16g01610.2   sequence type=transcript   gene model=Glyma16g01610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAGAAATTAGAGTATGAGTTTAAGGAACTTTGTGTTAATTGATGTCTATTTTGCTTCTAAACAGATTTATGAGGACCAGTCTCAGGGCATATTATGCTATGAAGATGAGAGTGGAGAAATAATTTGTGAAGGGTACGATGAAGGGCCTCGTTATCAACGAATTCCTAGGCCAACCCATCACCCAAGGGATGTTGAAATCATGAATCTTCTACAACAACAAAGTTGGCTTCAGATTGTTAAAGGAGAAGAAATCAATCATTTAGCCAAAGGTGCTCTTCATCTACAAGAGGATTTAAACTACAATAAATGGCTTTAACTCATGTTCCAAATCAATCAGGCTTTTGTCTCTCTCGAAGGCCTTAACAGTTACATGCAGTGCTAATATGTATCAGAAAGGAATAAATAGCAAAAGAATATGCTGTAATTGGTGAATCAACAAATAGGACATGTGCTGTCTTCAGCACATTTTTCATGCAAGTTGTACAAATTGACAGTGGTGATGCTTTTCTTATATGCTTTTATTTTCAATCTTCTCATATAGTTTCACATCAGAAATTTAGAATCTTATATTATCTGATAGAAGGAAAGAACTTAATTATAATTCACAAAGCAAAGAACTTGCCTGTGGCAAGGACATAGCTATATCATCATCAGTTTATCAAATCCTTGAGTCATCTTGGACTAAAAGTAATATGGTTAGTGAAGATAACTTCGAGTTATGTAGAATTATTATAAATTTATAGACAACATAATTCTCCTTCTAAACATTTAATGTAAGAATATTCAAGGCTGACACTCGAAACAACTTTATTAAGTTGAAACAATTCTGATCCAATATTCCTGTTTATTTATTAATTAACATTTTTAAGAATGTTGTATTGTTATGAAATATTTTTATTTTCTTTTATCAGATGTGGAAAAAAAAATTCTATATTAAGAGCACCTATATGAGAAAGACAATACTTGTATCATAGTATAAAATGGAAATAAGTGGTCGGTGTTTTTTTTTAATAGAAGTGGTCTGAGTTTAA

Coding sequences of Glyma16g01610

Limit To All Plant Sequences

>Glyma16g01610.1   sequence type=CDS   gene model=Glyma16g01610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTTAACAGTTATTCTTCATCAGCTCAAATCTCACTTCAGAAATATGGTTCATTTCTGAAATATACAAACAAAGAGTTCGTGTCCAAACGAAGCTGTGTCCCACAGAAAAAGGCACCAGTTGGTCCAGTAGTATTGAGAATCACATCATCCATCAAGAACAAGATTTATGAGGACCAGTCTCAGGGCATATTATGCTATGAAGATGAGAGTGGAGAAATAATTTGTGAAGGGTACGATGAAGGGCCTCGTTATCAACGAATTCCTAGGCCAACCCATCACCCAAGGGATGTTGAAATCATGAATCTTCTACAACAACAAAGTTGGCTTCAGATTGTTAAAGGAGAAGAAATCAATCATTTAGCCAAAGGTGCTCTTCATCTACAAGAGGATTTAAACTACAATAAATGGCTTTAA

>Glyma16g01610.2   sequence type=CDS   gene model=Glyma16g01610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTAAGGAACTTTGTGTTAATTGATGTCTATTTTGCTTCTAAACAGATTTATGAGGACCAGTCTCAGGGCATATTATGCTATGAAGATGAGAGTGGAGAAATAATTTGTGAAGGGTACGATGAAGGGCCTCGTTATCAACGAATTCCTAGGCCAACCCATCACCCAAGGGATGTTGAAATCATGAATCTTCTACAACAACAAAGTTGGCTTCAGATTGTTAAAGGAGAAGAAATCAATCATTTAGCCAAAGGTGCTCTTCATCTACAAGAGGATTTAAACTACAATAAATGGCTTTAA

Predicted protein sequences of Glyma16g01610

Limit To All Plant Sequences

>Glyma16g01610.1   sequence type=predicted peptide   gene model=Glyma16g01610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVNSYSSSAQISLQKYGSFLKYTNKEFVSKRSCVPQKKAPVGPVVLRITSSIKNKIYEDQSQGILCYEDESGEIICEGYDEGPRYQRIPRPTHHPRDVEIMNLLQQQSWLQIVKGEEINHLAKGALHLQEDLNYNKWL*

>Glyma16g01610.2   sequence type=predicted peptide   gene model=Glyma16g01610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLRNFVLIDVYFASKQIYEDQSQGILCYEDESGEIICEGYDEGPRYQRIPRPTHHPRDVEIMNLLQQQSWLQIVKGEEINHLAKGALHLQEDLNYNKWL*

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