SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72440 | AT | Annotation by Michelle Graham. TAIR10: CCAAT-binding factor | chr1:27268325-27273596 REVERSE LENGTH=1043 | SoyBase | E_val: 0 | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0010197 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| KOG2038 | KOG | CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein | JGI | ISS | |
| PTHR12048 | Panther | CCAAT-BINDING FACTOR-RELATED | JGI | ISS | |
| PF03914 | PFAM | CBF/Mak21 family | JGI | ISS | |
| UniRef100_G7KAU4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CCAAT/enhancer-binding protein zeta n=1 Tax=Medicago truncatula RepID=G7KAU4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B4AE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B4AE related cluster n=1 Tax=unknown RepID=UPI000233B4AE | SoyBase | E_val: 0 | ISS |
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Glyma16g01450 not represented in the dataset |
Glyma16g01450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g04870 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g012100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g01450.1 sequence type=CDS gene model=Glyma16g01450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAATCAAATTCCACCAAGTCAAAGAAACCAGAGGACGTTGACCTCCTCAAATCCGACATCGCCTCCTTCGCTTCCGAGCTCGGCTTGTCCACTAATCAACCACACTCAGGTTTCAACGATGTCGATTTCCGCAAAATCAAGCCGAACAAGCCCCCAAAGAAGAAGCAACAAACGCCCGAAAAACTCACACCCCAAAATTCCCAGAATCCAAAGATCAAAACTTTCGGCAAAAACAACGGACCCCACGAGAAGCGCAACGCCAATCCCGAACCGAAACCGAAACCCCCTGTTCTATCACTGGAGAACGGTGCCCACAGGGAAAAGGGGTTCAACAACAAGTTTAGGAACCTTCCAAAGCTTCCTTTAATGAAGGCAAGTGGTTTGGGAGTGTGGTTTGAGGACATGGGTGAGTTGGAAGTGAAGGTGATTGGGGAAGGGAAGAAGGTGGAGGTGAAGGATGTGGGAGAGTGGAAAGGGTTTGTGGAGAAAAAGAGGGAATTGGGGGATAGGTTGATGGCACAGTTTGTTCAGGATTATGAGTCATCAAGAGGGCAGAGTAGTGATATTAAGATGTTGGTTTCAACACAGAGGTCTGGGACTGCTGCTGATAAAGTTTCTGCTTTTGCTGTGCTTGTGGGGGATAATCCAATTGCAAATTTGCGTTCTCTTGATGCTCTTTTGGGAATGGTGACATCCAAGGTTGGAAAGCGCCATGCCTTGACAGGTTTTGAAGCACTTCAAGAATTATTTATTGCAAGCTTATTACCAGATCGTAAATTGAAGACCTTGATACAGCGGCCCCTAAATCATGTTCCTGAAACTAAAGATGGTTACTCCCTTCTCCTTTTCTGGTATTGGGAGGAATGTTTGAAGCAGAGATATGAACGGTTTGTTGTTGCACTTGAAGAAGCATCACGAGACATGCTACCTGCTCTAAAAAACAAGGCATTAAAGGCCGTATACGTGCTACTGAGTCGGAAGTCAGAGCAAGAACGTAGACTACTTTCTGCACTTGTCAATAAACTTGGGGATCCAGATAATAAGGCAGCATCTAATGCTGACTTTCACTTGTCCAACCTTTTGTCTGACCACCCAAACATGAAGGCTGTGGTTATTGACGAGGTGGATTCTTTTCTCTTTCGGCCTCATTTAGGACCTCGTTCACAGTACCATGCTGTTAACTTCTTGAGCCAAATTCGTCTCACAAATAAAGGAGATGGACCAAAAGTGGCGAAACGTCTTATAGATGTATATTTTGCATTGTTTAAGGTTTTGATTTCTGGCGCAAGCAGCAATCATAAATTTGATAAAAGAAGCAAGGCAAAACCAAAAGAAGAAAAATCAAAAGAGTCATCAGAATCACATGTGGAATTGGACTCTCGTCTTCTATCATCTCTCCTAACTGGAGTGAATAGAGCATTTCCCTTTGTCTCAAGTAATGAAGCTGATGACATTGTTGACATTCAAACGCCAGTACTTTTCCAATTGGTTCATTCAAAGAATTTCAATGTTGGAGTTCAAGCACTGATGCTTCTTGATAAAATTTCATCCAAAAATCAGATAGCAAGTGATCGGTTTTACCGTGCTTTGTACTCTAAACTTTTGCTTCCGGCTGCCATGTATACATCCAAGGCAGAAATGTTCATTGCACTTCTTCTCAGAGCAATGAAAAGGGATATTAATTTAAAGCGCGTGGCTGCATTTTCTAAACGTCTATTGCAGATTGCACTTCAGCAGCCACCACAATATGCCTGCGCATGTCTTTTCCTTCTTTCTGAACTCCTTAAAGCCAGACCACCTTTATGGAACATGGTGTTGCAGAACGAGTCTGTTGATGAGGAACTTGAACACTTTGAAGATGTTATAGAAACTGATAATGAGCCTAGCACTGTATCAACTAAACAAAATGATGATATTGGAGTTGTTCAGAATGGTGAGGATGGCAATTCTGACTCCAGTTCTTCTGAAAGTGAAGATGATCTTCCAGCATCTTCTGAAGATGATGATTTGGATGATGATGCTTCAGAGGATGCAGATTTTTTGCTTGCAAAGAATGAAAAAGAACATAAGAAACCAAAAAAATCAAAATCTGTATCTGATAAAGAAGGTCAGCAGTCACAATTATCTGTCAAGAAGTCTTCCCTTCCTGGAGGCTATGATCCACGACACAGAGAGCCTTTGTACTGCAATGCAGACCGTGTAAGTTGGTGGGAGTTAATGGTGCTTGCTTCACATGCACACCCTTCGGTTGCTACTATGGCCAAAACTCTTCTTTCTGGGGCCAACATTGTCTATAACGGAAATCCCTTAAATGACCTCTCTATGACTGCTTTCCTGGACAAATTCATGGAGAAGAAAGCGAAACGAAGCACATGGCATGGTGGTTCTCAGATTGAACCTGCCAAGCAGATGGATGTTAACAACCAATTGATTGGAGCAGAAATTCTTTTACTAGCTGAGGAAGATGTACCTCCTGAGGATCTTGTCTTCCACAAGTTCTACACAAACAAAATGAGTTCCTCTACTAAACCGAAGAAAAAGAAAAAGAAGTCAGCTGATGAGGAAGCAGCTGAGGAGTTGTTTGATGTTGATGATGGTGAGGTTGATGGAGGGGATGAGAGTGACAATGAAGAGATTGAGAACCTGTTGGATTCTACTGATCCAACTTTAGGACCAGACAGTGACTATGATTATGATGATTTGGATGAAGTAGCTGATGAGGAAGATGAGGACTTGATTGGTGATGTTAGTGATGCAGAGATGAATATGGATATACCCTCTGATATGGAAGAGGAAGAGGTTGATGCTTCTCCACCTGATGATGATGACATTGATATTCAGGTTGGAGATGTTGATGATGCCTCTGATGGTGATGAGGAGGAAGCTGGCAAAAGAAAACGAAAGCATGAAAGTGGTGGTAAGAAAGGTGTATCTCCATTTGCTAGTTATGAAGAGTTTGAGCATCTAATGGAAGATGATGACCATGCTGAGAAGAAATCTTATCCCAAGAAAACCAAGTCTAAGAAAAGAAAAGGTTAA
>Glyma16g01450.1 sequence type=predicted peptide gene model=Glyma16g01450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKSNSTKSKKPEDVDLLKSDIASFASELGLSTNQPHSGFNDVDFRKIKPNKPPKKKQQTPEKLTPQNSQNPKIKTFGKNNGPHEKRNANPEPKPKPPVLSLENGAHREKGFNNKFRNLPKLPLMKASGLGVWFEDMGELEVKVIGEGKKVEVKDVGEWKGFVEKKRELGDRLMAQFVQDYESSRGQSSDIKMLVSTQRSGTAADKVSAFAVLVGDNPIANLRSLDALLGMVTSKVGKRHALTGFEALQELFIASLLPDRKLKTLIQRPLNHVPETKDGYSLLLFWYWEECLKQRYERFVVALEEASRDMLPALKNKALKAVYVLLSRKSEQERRLLSALVNKLGDPDNKAASNADFHLSNLLSDHPNMKAVVIDEVDSFLFRPHLGPRSQYHAVNFLSQIRLTNKGDGPKVAKRLIDVYFALFKVLISGASSNHKFDKRSKAKPKEEKSKESSESHVELDSRLLSSLLTGVNRAFPFVSSNEADDIVDIQTPVLFQLVHSKNFNVGVQALMLLDKISSKNQIASDRFYRALYSKLLLPAAMYTSKAEMFIALLLRAMKRDINLKRVAAFSKRLLQIALQQPPQYACACLFLLSELLKARPPLWNMVLQNESVDEELEHFEDVIETDNEPSTVSTKQNDDIGVVQNGEDGNSDSSSSESEDDLPASSEDDDLDDDASEDADFLLAKNEKEHKKPKKSKSVSDKEGQQSQLSVKKSSLPGGYDPRHREPLYCNADRVSWWELMVLASHAHPSVATMAKTLLSGANIVYNGNPLNDLSMTAFLDKFMEKKAKRSTWHGGSQIEPAKQMDVNNQLIGAEILLLAEEDVPPEDLVFHKFYTNKMSSSTKPKKKKKKSADEEAAEELFDVDDGEVDGGDESDNEEIENLLDSTDPTLGPDSDYDYDDLDEVADEEDEDLIGDVSDAEMNMDIPSDMEEEEVDASPPDDDDIDIQVGDVDDASDGDEEEAGKRKRKHESGGKKGVSPFASYEEFEHLMEDDDHAEKKSYPKKTKSKKRKG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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