Glyma16g01410 - SoyBase

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Report for Sequence Feature Glyma16g01410

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1003960
stop:	1007167
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g01410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17350	AT	Annotation by Michelle Graham. TAIR10: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 \| chr1:5942391-5944272 FORWARD LENGTH=227	SoyBase	E_val: 7.00E-125	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2435	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13194	Panther	COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30	JGI		ISS
PTHR13194:SF7	Panther	COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30	JGI		ISS
PF08547	PFAM	Complex I intermediate-associated protein 30 (CIA30)	JGI		ISS
UniRef100_G7L8D3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADH dehydrogenase 1 alpha subcomplex assembly factor n=1 Tax=Medicago truncatula RepID=G7L8D3_MEDTR	SoyBase	E_val: 2.00E-130	ISS
UniRef100_I1MK50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MK50_SOYBN	SoyBase	E_val: 4.00E-179	ISS

Expression Patterns of Glyma16g01410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g01410 not represented in the dataset	Glyma16g01410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g01410

Paralog	Evidence	Comments
Glyma07g04830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g01410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g011600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g01410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g01410

Limit To All Plant Sequences

>Glyma16g01410.2   sequence type=transcript   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTAGTGGTTGTAAAGTTGGGCCATAGAAGCTGAAAAAGCCCAAAAAAAGAAGGCCCATTTACTGATATGGTTGATGGTTGAGGCTGTCGCCACAGTTGGTGGTGGCGGGGGGAGAGAGAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCTTCAGCTTCAATTCCAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTGGGTGGTCTTGTGAGTATTGTGACCGGGATGATTTTGGTGCAGATCTACACGGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAATTCATGGCAAGCTTTTGTTTATGTGCCTGAAGGAAACTGGTATATCATGAAGGTTTTGTACCTAGTTGAGCGCTGCCTATGGTTTCATAGTCGGTCCCAAAGTCTGTGCAAAGGAGGAGGGTTGTGTTAGGTCATCAGCACCTAACATAAAATTTGTCGAAATACTAAACATGGACCACTCATGGTCTTTAACCGAGTCCAATGACATTGTGTGATCCATATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAACGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTAGGCATGTCTCTATCTGTCAATGCTGAGGGTGGTGTCCCAGGTGCTAGATCTGGACCAGGTGATTTCAGAGTTGAACTTGATTGGATCAAAGCCATGAGAACAGAATAAAGTATTGGTTATGCATAAAAAATTAAGATTTTTTCTCTTCTTTTAGGGTGCTTTATTTTTTTGTAATAATAATAATGTATCATTTTATGGTTCATAAAAGGAAAATATATTTGGTAGTTATTCCAGTACCAGTACTCTTCCGGTATTATTGAGTGGTATGGTAGGTGCAATAATGGAAGCACTTTCGGAAACAAAATTCATTGTTTTCATCATGCTCATAGAAGAAAAATCAATACTGATTGTCACCTTGAAAATATTGCAGACATAATGGGATTGTCGGTCATCAATTAAGTGAGGTGAATTTGATAGAAAGGTGCATTACCACTAACCATGTAATAGGGGCAAATATCATTATCACTTATCAGTTTGTCTTGTACCCATACCTAAATTAAAGCTAGCTTATTTCCAGCAATTATGATCTTCTCATG

>Glyma16g01410.3   sequence type=transcript   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTAGTGGTTGTAAAGTTGGGCCATAGAAGCTGAAAAAGCCCAAAAAAAGAAGGCCCATTTACTGATATGGTTGATGGTTGAGGCTGTCGCCACAGTTGGTGGTGGCGGGGGGAGAGAGAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCTTCAGCTTCAATTCCAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTATCTACACGGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAATTCATGGCAAGCTTTTGTTTATGTGCCTGAAGGAAACTGGTATATCATGAAGGTTTTGTACCTAGTTGAGCGCTGCCTATGGTTTCATAGTCGGTCCCAAAGTCTGTGCAAAGGAGGAGGGTTGTGTTAGGTCATCAGCACCTAACATAAAATTTGTCGAAATACTAAACATGGACCACTCATGGTCTTTAACCGAGTCCAATGACATTGTGTGATCCATATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAACGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTAGGCATGTCTCTATCTGTCAATGCTGAGGGTGGTGTCCCAGGTGCTAGATCTGGACCAGGTGATTTCAGAGTTGAACTTGATTGGATCAAAGCCATGAGAACAGAATAAAGTATTGGTTATGCATAAAAAATTAAGATTTTTTCTCTTCTTTTAGGGTGCTTTATTTTTTTGTAATAATAATAATGTATCATTTTATGGTTCATAAAAGGAAAATATATTTGGTAGTTATTCCAGTACCAGTACTCTTCCGGTATTATTGAGTGGTATGGTAGGTGCAATAATGGAAGCACTTTCGGAAACAAAATTCATTGTTTTCATCATGCTCATAGAAGAAAAATCAATACTGATTGTCACCTTGAAAATATTGCAGACATAATGGGATTGTCGGTCATCAATTAAGTGAGGTGAATTTGATAGAAAGGTGCATTACCACTAACCATGTAATAGGGGCAAATATCATTATCACTTATCAGTTTGTCTTGTACCCATACCTAAATTAAAGCTAGCTTATTTCCAGCAATTATGATCTTCTCATG

Coding sequences of Glyma16g01410

Limit To All Plant Sequences

>Glyma16g01410.1   sequence type=CDS   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGGCTGTCGCCACAGTTGGTGGTGGCGGGGGGAGAGAGAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCTTCAGCTTCAATTCCAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTATCTACACGGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAATTCATGGCAAGCTTTTGTTTATGTGCCTGAAGGAAACTGGTATATCATGAAGATTCCTCTAGCTCGATATTTACCTACTTGGAGAGGGAACGTTATAGATGCACAAATCGAAATGAATCCATCCCGTGTTTTAGGCATGTCTCTATCTGTCAATGCTGAGGGTGGTGTCCCAGGTGCTAGATCTGGACCAGGTGATTTCAGAGTTGAACTTGATTGGATCAAAGCCATGAGAACAGAATAA

>Glyma16g01410.2   sequence type=CDS   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGGCTGTCGCCACAGTTGGTGGTGGCGGGGGGAGAGAGAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCTTCAGCTTCAATTCCAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTGGGTGGTCTTGTGAGTATTGTGACCGGGATGATTTTGGTGCAGATCTACACGGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAA

>Glyma16g01410.3   sequence type=CDS   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGGCTGTCGCCACAGTTGGTGGTGGCGGGGGGAGAGAGAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCTTCAGCTTCAATTCCAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTATCTACACGGAGAATTGGGTCAATTCACCTGGACAGATGGAAGATAATTCATGGCAAGCTTTTGTTTATGTGCCTGAAGGAAACTGGTATATCATGAAGGTTTTGTACCTAGTTGAGCGCTGCCTATGGTTTCATAGTCGGTCCCAAAGTCTGTGCAAAGGAGGAGGGTTGTGTTAG

Predicted protein sequences of Glyma16g01410

Limit To All Plant Sequences

>Glyma16g01410.1   sequence type=predicted peptide   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEAVATVGGGGGREREREMSRLRRLIQASVDATKKVISGNLDDLMPPPERPIFSFNSKQELSKWHLYSDSEFGGLSSASLQITESENGATSGIFSGNLSLDVSEGSKWNITRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPEGNWYIMKIPLARYLPTWRGNVIDAQIEMNPSRVLGMSLSVNAEGGVPGARSGPGDFRVELDWIKAMRTE*

>Glyma16g01410.2   sequence type=predicted peptide   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEAVATVGGGGGREREREMSRLRRLIQASVDATKKVISGNLDDLMPPPERPIFSFNSKQELSKWHLYSDSEFGGLSSASLQITESENGATSGIFSGNLSLDVSEGSKWNITRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTGWSCEYCDRDDFGADLHGELGQFTWTDGR*

>Glyma16g01410.3   sequence type=predicted peptide   gene model=Glyma16g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEAVATVGGGGGREREREMSRLRRLIQASVDATKKVISGNLDDLMPPPERPIFSFNSKQELSKWHLYSDSEFGGLSSASLQITESENGATSGIFSGNLSLDVSEGSKWNITRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPEGNWYIMKVLYLVERCLWFHSRSQSLCKGGGLC*

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