SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72390 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). | chr1:27245455-27251218 FORWARD LENGTH=1325 | SoyBase | E_val: 9.00E-24 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF12090 | PFAM | Spt20 family | JGI | ISS | |
| UniRef100_G7L8A3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein FAM48A n=1 Tax=Medicago truncatula RepID=G7L8A3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B7A5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B7A5 related cluster n=1 Tax=unknown RepID=UPI000233B7A5 | SoyBase | E_val: 0 | ISS |
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Glyma16g01268 not represented in the dataset |
Glyma16g01268 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g04690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g010400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g01268.1 sequence type=CDS gene model=Glyma16g01268 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGTCTCTTTCAAGGTGTCCAAAACCGGCACTAGGTTTCGCCCCAAGTCGATTCCCCAACTTCAAGATGGCTCATCCGACAATTCCAAGTCCCAGAGTGATCTTGTTGAGGCTGGTGAAAACATTGCTCAGATTCCCCAGTCATCTGTTTCATCTGAAACTCTTTCATTAGCAGATAGGGAAGCTTCTTTCACATTGAACCTGTTTCCAGATGGTTATTCTATTGGAAAACCCTCCGAGAATGAAGCAGCTAGTCAGTCAAAATACCAAGATTTTCCCAAGTCGTTACATCCATATGACAGGTCGTCTGAGAGTCTATTCTTGGCCATTGAGTCAGGTCACTTGCCTGGGGATATTCTTGATGATATACCTGCCAAGTATGTTGATGGAGCACTTATATGTGTGGTGCATGATTATCGAAGATGCTCTTCTGATAAAGGGAGTAGTGTGTCTGCAGAAAGTTCTACTGTTAGCAAAGTATGCCTCAAGATGTCGTTGGAAAATATTGTAAAGGACATCCCATCGATTACTGACAAGTCTTGGACATATGGTGATTTGATGGAAGTTGAGTCGAAGATACTGAAAGCATTACAACCAAAACTTCATCTAGACCCTACTCCAAAGTTAGATCGGCTGTGTGAAAGTCCACTTCCAACAAAGCTCAATTTGCCAAGAAAGCGATTAAAAAATATGCCAGAGTTTGCTGTTACTTCTACCAATAAAATTCATGGGAAGAAAGTATGCATAGATAGAGTGCAAGAAAGCTCAATTAGCAGAGTAGGTGATGTAGGAAACACTGCATCCAATGCTATTGTGCAGCAGACCCATGAAAATCCAGCCATGCAAAATCTTAGTCCAAATGTTGCCATGGCCTTGAGATCTAAGAATTTTATACCTGATTCTTCCATCCCTAACTTTCCTATGATGACCCATCAATCAAGATATGCAATGGCTGTTGGAACTCAGAGAAGTTTGCAGGAGCAGGGACCCGCTCCTTCCATTAATTCATCAGTGGCTTCTCCTGCTACACAATATGCTGATAATGCAAACTCAGGTGCCTCTCTTCTTGGAAAAAGGGATAATCAAGATGGACAAGCATCGCCTTTGTCCAATATTGCTAAAAGAATGAGGCCTGGTTCCACTGTTGTTGATGCAATGCAGCATCAGCAAATAGGCTCACACGTTGAAGCTCTTCAAGGATCAGATATGAATTGGCAGAATTCATTGCAACAACAACCAATGGCCAGAGGTATTCAGTATGCAAGTGGTGGCATTCAGAAGTTTCCTCAGCAGGTTTTTGAAGGGGGGGCAAATCAAGAGACAGGGGCAATTCCCTTTGCTTCTAGTCAGCAGGGCATGAGGTTGGTTGCCAAGGAAGAACAGTTTGAAATGGAAAAATTAGATGGTGCAGAAATAAACTGCAATAAAAGTGACATGGAAATGGAAATGAACAATTTAGATCCACAACAATTGCGGCTTCAGCAACGATTGCCACAGCATGCATTCATGAGGCCTAATTTCCCTCAGGCAGCCTGGAACAGTTTGGGTCAGCATATGGGCAAAGAAACAAAAAAAGAAGACCAGCTTCAGAAAAGGAAATCAGTACAGAGTCCTCGCTTATCCTCCGCGGCATTACCTCACTCCCCATTGTCTTCGAAATCAGGTGAATTTTCCAATGGTGCAGTTGGACCAAGTTTTGGACCATCTGCAATGGCTGCTGCACCTGGGACATCACAAAAAGACAAGGCAGCAATGGCCTCAGTTCCTGCTACTGTTGGAACTCCATCTAATGATTCTACACAAAGACAACATGCACAACTAGCTGCAAAACGGAGATCTAATTCTCTTCCCAAGACCCCAGCAATGAATGGAGTTGGTTCTCCTGTTAGTGTTGGTACAACCAGTGTCCCATTGAATGCAAATAGTCCCTCAGTTGTGACCTCGGGTTTTGTTGATCAAAATCTTCAAAATATGCTTGAAAGGTTCTCAAAAATTGAAATGGTGACAATGAGGCATCAACTTAACTTTAAGAAGAACAAGGTTGATGACTATCCCATTAAGAAGCAGAATCCATATGTACCAAATAATCTATCAGCACTTCTTGCTAATGCTAATGCAACTAATAATGAGGGATTGCCAGAGGAGTCAATTTCTATTTCAAAGTCGCTTATAGGTGGGAGTATGAATGCGTGCAAAATGAGAATCTTAAATTTTTGTGTGCCTGAGCGTGTAGTTCAAGGAAGTATTGTTACTATAATTCCGAGGATGCGAACTAGGATGATTATGTTTGAAAAATCTGATGGTACTGTGGCTATGCATTGTGGGGTGATTGAAGAAGTTGATTACGTAGCTGCAGAGGATCATCTCCTCACATTACCCAATACTCATTCTGCGGATTTGCTTGCACAACAGTTCTGTTCACTGATGGTACGCGAAGGATATGTGAAGGAAGATGATCGAATCCAACTTAAACCAAACCGGGTGAACCTTCCGTTGGGCAATCAATCTACTACCCCTAATAATGCTGTAGTTGAAATGCAACAATATGGAGAAGTCATTCCTGGTCAATCATCCAATGAAGTTGCAAAACCAGCTAGTGGCAGTAATGCACCTATAAACCTCTCTCAGAATCTTCTAACAAACCCAAGGATGTTGCCACCTGGAAGCCCCCAAGCCTTACAGATGTCCCAAGGACTTCTCTCTGGTGTTTCAATGGCTTCAAGACCACAGCAAATGGACTCACAACAAGCTGTACAGCAACAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCTGCAACAAAATCAACACACACTCATTCAACAGCAGAATCCCCAGTTCCAGAGGTCTCCTATGATGCTTGGGACAAATCAGCTTTCACACTTAAATCCAGTTGGACAAAACTCCAACATGCCATTAGGTAATCACATGCTCAACAAGCCTTCAGCTCTCCAGATGCAGATGTTCCAACAACAGCAACAGCAGCCTCAAATGCAAAGGAAAATGATGATGGGACTTGGACAAGCCGTGGGAATGGGTAACTTGAGAAATAACCTAGTTGGGCTTGCACCAATGGGCAACCCTATGGGAATGGGAGGTGCGAGGGGAATAGGAGGAAGTGGAATCTCAGCACCAATGACATCTATTGCTGGCATGGGAAATATGGGTCAGAGCCCAATGAATCTTAGCCAGACTTCAAATATTACTAATTCCATAAGCCAACAGTTTAGGTCCGGATCATTAAATGCAGCAGCATCTGCTGACCTTATATCAAGGCTTAGATTGGTACATTCGAATCGTCAAAGCATGCTAGGGTCCCCTCAGTCTAACCTAGCTAGCATCTCAGGGGCCAGACAAATACACCCTGGTGCTACTCCTAGTCTTTCAATGTTGGGCAGGGCTAATACAATGCAGCGACCAATTGGACCTATGGGTCCACCAAAGATGATGGCAGGGATGAATCTTTATATGAGTCAGCAGCAGCAACATCAACAACCCCAACAGCAGCAGCAGCAACACCAACAGCAATTGCAACTCCAACAGCATATGCAGCAGCAATTACAGCAGCAACAGCAACAACAAGAAACAACTTCACAATTGCAGTCAGTTGTTTCACCCCCACAGGTGGGATCGCCATCAATGGGCGTACCACCATTGAACCAACAAACGCAGCAGCAAGCCAGCCCTCAGCAAATGAGTCAACGAACTCCGATGAGTCCACAAATGAGCTCAGGTGCAATTCATGCCATGAGTGCTGGTAATCCTGAAGCTTGTCCAGCCAGTCCACAGTTGAGCTCTCAGACCCTTGGCTCTGTTAGTAGCATAACAAACTCCCCTATGGACATGCAAGGTGTTAACAAGAGCAACTCTAATGCACAATGA
>Glyma16g01268.1 sequence type=predicted peptide gene model=Glyma16g01268 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVSFKVSKTGTRFRPKSIPQLQDGSSDNSKSQSDLVEAGENIAQIPQSSVSSETLSLADREASFTLNLFPDGYSIGKPSENEAASQSKYQDFPKSLHPYDRSSESLFLAIESGHLPGDILDDIPAKYVDGALICVVHDYRRCSSDKGSSVSAESSTVSKVCLKMSLENIVKDIPSITDKSWTYGDLMEVESKILKALQPKLHLDPTPKLDRLCESPLPTKLNLPRKRLKNMPEFAVTSTNKIHGKKVCIDRVQESSISRVGDVGNTASNAIVQQTHENPAMQNLSPNVAMALRSKNFIPDSSIPNFPMMTHQSRYAMAVGTQRSLQEQGPAPSINSSVASPATQYADNANSGASLLGKRDNQDGQASPLSNIAKRMRPGSTVVDAMQHQQIGSHVEALQGSDMNWQNSLQQQPMARGIQYASGGIQKFPQQVFEGGANQETGAIPFASSQQGMRLVAKEEQFEMEKLDGAEINCNKSDMEMEMNNLDPQQLRLQQRLPQHAFMRPNFPQAAWNSLGQHMGKETKKEDQLQKRKSVQSPRLSSAALPHSPLSSKSGEFSNGAVGPSFGPSAMAAAPGTSQKDKAAMASVPATVGTPSNDSTQRQHAQLAAKRRSNSLPKTPAMNGVGSPVSVGTTSVPLNANSPSVVTSGFVDQNLQNMLERFSKIEMVTMRHQLNFKKNKVDDYPIKKQNPYVPNNLSALLANANATNNEGLPEESISISKSLIGGSMNACKMRILNFCVPERVVQGSIVTIIPRMRTRMIMFEKSDGTVAMHCGVIEEVDYVAAEDHLLTLPNTHSADLLAQQFCSLMVREGYVKEDDRIQLKPNRVNLPLGNQSTTPNNAVVEMQQYGEVIPGQSSNEVAKPASGSNAPINLSQNLLTNPRMLPPGSPQALQMSQGLLSGVSMASRPQQMDSQQAVQQQQQQQQQQQQQQQQQQQQLQQNQHTLIQQQNPQFQRSPMMLGTNQLSHLNPVGQNSNMPLGNHMLNKPSALQMQMFQQQQQQPQMQRKMMMGLGQAVGMGNLRNNLVGLAPMGNPMGMGGARGIGGSGISAPMTSIAGMGNMGQSPMNLSQTSNITNSISQQFRSGSLNAAASADLISRLRLVHSNRQSMLGSPQSNLASISGARQIHPGATPSLSMLGRANTMQRPIGPMGPPKMMAGMNLYMSQQQQHQQPQQQQQQHQQQLQLQQHMQQQLQQQQQQQETTSQLQSVVSPPQVGSPSMGVPPLNQQTQQQASPQQMSQRTPMSPQMSSGAIHAMSAGNPEACPASPQLSSQTLGSVSSITNSPMDMQGVNKSNSNAQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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