SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17370 | AT | Annotation by Michelle Graham. TAIR10: oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419 | SoyBase | E_val: 0 | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003730 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA 3'-UTR binding | SoyBase | N/A | ISS |
| KOG0148 | KOG | Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) | JGI | ISS | |
| PTHR24012 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24012:SF210 | Panther | JGI | ISS | ||
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_B9ST80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleolysin tia-1, putative n=1 Tax=Ricinus communis RepID=B9ST80_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MK29 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MK29_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g01230 not represented in the dataset |
Glyma16g01230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g04640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g010100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g01230.1 sequence type=CDS gene model=Glyma16g01230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGTCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGCTTGTAAGCTTATCAGAAAGGATAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCGAGTGGTCAGAGAGAGGATACGTCAGGTCATTACAACATTTTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCACTTGTTCAGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTGGTACTGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACGTATGGCTCATCTGATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGATTGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTAGCCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTTTGCCTGGCCTCTCTGCAACTGATCTTTTGGTGTATGAGCGACAGCTAGCAATGAGCAAGATGGGCGGCGTCCATGCTTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAAGCAGCTATTGGAGCTAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAATAA
>Glyma16g01230.1 sequence type=predicted peptide gene model=Glyma16g01230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEACKLIRKDKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGTEEKQNSDAKSVVELTYGSSDGKETSNSDAPENNPQYTTVYVGNLAPEATQLDLHHHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPAGTASNPLPPPAAASLPGLSATDLLVYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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