Glyma16g01020 - SoyBase

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Report for Sequence Feature Glyma16g01020

Feature Type:	gene_model
Chromosome:	Gm16
Start:	671417
stop:	673606
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g01020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13840	AT	Annotation by Michelle Graham. TAIR10: GRAS family transcription factor \| chr3:4555305-4556837 REVERSE LENGTH=510	SoyBase	E_val: 5.00E-167	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03514	PFAM	GRAS family transcription factor	JGI		ISS
UniRef100_A1DQP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulation signaling pathway 1 protein n=2 Tax=Lotus japonicus RepID=A1DQP9_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1MK09	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MK09_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g01020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g01020

Paralog	Evidence	Comments
Glyma07g04430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g01020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g008200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g01020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g01020

Limit To All Plant Sequences

>Glyma16g01020.1   sequence type=CDS   gene model=Glyma16g01020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATGGAACCAAATCCAACATCAGATCACAGTCTAGACTGGTTTGAAGGTTCTGTGTCTTACTTTCCACCACTCTTAGATTATCCATACGACTCTGGTGACATCCAAGACTATCAGTTGTGGGAACAAGACATAACCAGCCACTACCAAACTGATACCAATACCAGTTCTTCCCCTAATGCTACCAACATTTCTACAACCACAACACCCCTTGAGACTTGTGACTCTAATAACAACCTACCACTTTCTGATTTGCCAAAGAAAAGAAATGCCACTGATGAGTCTAGTCCCAAACCACCACAAAACCACAAGCACAAGAAAATCAAGAGCAAACCAATAAACAATGAAGCCTATACCGGACACGCAGAAGGGACAACAACAACAACAGTTAGAAAATCTGGTGGGAACAAGAAAGGGGGAGCTAAGGCCAATGGAAATAACTGCAACAACAAGGATGGTAGATGGGCAGAACAGTTGCTGAACCCTTGTGCTGCAGCCATAACAGGTGGAAACCTGAACCGTGTGCAACACCTCTCGTATGTTCTCCATGAGTTAGCATCACCTACTGGCGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTGACACAACATCTATCATCTTCTCCCTCTTCAGGGTCTATAACTTTTGCTTCCAGCGAGCCGCGGTTCTTCCAAAAGACACTCCTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCCTTCCCTAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGCGAAGACACTGATAATAATTCACGCACCCTTCACATCCTTGACATTGGAGTCTCTCATGGAATGCAATGGCCAACTTTTCTTGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCGTTGGTTCGCCTCACCGTGGTCACTGCTTCTTCCTCCACTGAAAATGACACACCATTTTGTATTGGTCCTCCTGGTGATAACTTCTCTTCTAGACTCCTTGGTTTTGCTCAGTCAATGAATGTTAACTTGCAGATAAACAAACTAGATAACTGTCCATTGCATACTCTGAATGCTCAAAGTGTTGACACCTCCCCGGATGAAATCTTTGTTGTGTGTGCACAGTTTAGGTTGCATCAGTTGAATCACAATGCCCCTGATGAAAGGAGTGAGTTTCTGAAGGTGTTGAGAAACATGGAGCCCAAAGGGGTGATACTAAGTGACAACAACATGGGATGTTGTTGCAATTGTTGTGGGGATTTCACCACTGGATTCTCTCGGAGGGTGGAGTACTTGTGGAGGTTTTTGGACTCAACAAGCTCCGCGTTCAAGGGCCGGGAGAGCGACGAGAGGAGAGTGATGGAAGGTGAGGCTGCGAAGGCATTGACAAACCAGCGCGAGACGAATGAAGGGAAGGAGAAATGGTGTGAGAGAATGAAAGAAGCAGGGTTTGTGGGGGAAGTATTTGGAGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGGAAGTATGATGGTAATTGGGAGATGAAAGTGGAAGATGACAATACAAGTGTTGGACTATGGTGGAAGGGGCAAAGTGTTTCTTTCTGTTCTTTGTGGAAGCTGGATGGGAATTATAAGACCTCAACATTTACATCATGA

Predicted protein sequences of Glyma16g01020

Limit To All Plant Sequences

>Glyma16g01020.1   sequence type=predicted peptide   gene model=Glyma16g01020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMEPNPTSDHSLDWFEGSVSYFPPLLDYPYDSGDIQDYQLWEQDITSHYQTDTNTSSSPNATNISTTTTPLETCDSNNNLPLSDLPKKRNATDESSPKPPQNHKHKKIKSKPINNEAYTGHAEGTTTTTVRKSGGNKKGGAKANGNNCNNKDGRWAEQLLNPCAAAITGGNLNRVQHLSYVLHELASPTGDANHRLAAHGLKALTQHLSSSPSSGSITFASSEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDTDNNSRTLHILDIGVSHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSSTENDTPFCIGPPGDNFSSRLLGFAQSMNVNLQINKLDNCPLHTLNAQSVDTSPDEIFVVCAQFRLHQLNHNAPDERSEFLKVLRNMEPKGVILSDNNMGCCCNCCGDFTTGFSRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQRETNEGKEKWCERMKEAGFVGEVFGEDAIDGGRALLRKYDGNWEMKVEDDNTSVGLWWKGQSVSFCSLWKLDGNYKTSTFTS*

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