Glyma16g00650 - SoyBase

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Report for Sequence Feature Glyma16g00650

Feature Type:	gene_model
Chromosome:	Gm16
Start:	343215
stop:	350061
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g00650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13950	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13266.1); Has 339 Blast hits to 265 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:4604149-4605195 FORWARD LENGTH=207	SoyBase	E_val: 2.00E-12	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045088	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of innate immune response	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_F8WLB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat family protein n=1 Tax=Citrus unshiu RepID=F8WLB2_CITUN	SoyBase	E_val: 4.00E-29	ISS
UniRef100_I1MJX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJX5_SOYBN	SoyBase	E_val: 2.00E-145	ISS

Expression Patterns of Glyma16g00650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g00650 not represented in the dataset	Glyma16g00650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g00650

Paralog	Evidence	Comments
Glyma07g04010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g00650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g005100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g00650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g00650

Limit To All Plant Sequences

>Glyma16g00650.3   sequence type=transcript   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAACACATTTCGGCATGCAGTTGGTTTTCTCACCTATCATATATACCATAGCAAGGGAAAGGTAGGAGAGATCGATCAGTTACTATGAACGTTGAAAGCGAGAGGAAAGATGAACAAGAGGTGAAAGGGTGGAGAAAAGCTTTAAAAAGTGTAGGGAATTGGCTGGCACATAAGGATAAGGATGAATGGTTGAAGGACATGAGGGGAGTGCTGAGTTTGGTGTCTACGGTGATCGCAACAATGACCTTTCAAAGTGCTTTAAATCCACCAGGTGGAGTTAGACCCGGAAACGAGAGTGGAGTTGTTCAATGTCCAGAAAACAGTGCAGATAATAATCCATGTCCCGGAGAATCTATCCTAGCTGTTCTTTACCCTGATGAATATAAAATATTCCTCATTTGGAACACAACATGTTTCATTTCATCTTTAGCAGTGTGTCTCTTGCTTGTAAGTGGGTTCCCTCTCAATCACAGATTCTTCACCTGGCTTTTGTCAATAGGGATGTGCATCACCATCTCCAGCCTCACTCTTACCTACATGACTGGTGCGGGAATGGTCACCCCGGATCCCCTTTGGAATACAACCAACTCCATGTTTAATAAAGTTATTTATATTTGGATTTCACTGCTAGGACTCGTCGCATTTGTCCTTTGCCTACGCCTAATTGTTTGGATTGTCTTTGCCTGCAGGTAATTAAACCTTGAAATCCAATATCCCATGCCATACTTTTAGTATTCAAGAGGTGTGATTTCAATAGGAAACGAGAATGTAACTCATGCTATTCTCTCTATTCTTGTATCATTTTGGTGTAAGCATGTGTGGTAGGCGTGTATAATCTTTGTGATTCTCAAGTCTTTATATATTATGGGATATATTTCTATAATAATCTCCTGTGTTTCGC

>Glyma16g00650.4   sequence type=transcript   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTATATACAATATATATACTAATATATAAATATTTCGTTTTGGTGTACATTTTTTGTTGAATATTTTTATCTCTTTTTTATAAAAAGACATTACGTGCGTGCATGCCTCTCCTTTTCCCTAGTATCATATATAAATAAATTATATCATATTGTTTTATTAATTAATTATACAATTGTTTAGGCAATTAATTTAAGCAATTGTTTAGGCAACTAAACAAAACATATTATTGTAAATTCACTTTTCAATAAACATATTCCAACATGAAACTGATTTTACCATCATCAATGATTAAATTGCTCTTTTGACAACTAATTAATCCAAAACACATCTGAATTTTTAGAAAATTCCCACTTTTCCCTTATTTCTTAGCTTTTTGAACGATTTTGCAACTATATATATTTGCCTTTCCTGTCTTCAGAAAAACACATTTCGGCATGCAGTTGGTTTTCTCACCTATCATATATACCATAGCAAGGGAAAGGTAGGAGAGATCGATCAGTTACTATGAACGTTGAAAGCGAGAGGAAAGATGAACAAGAGGTGAAAGGGTGGAGAAAAGCTTTAAAAAGTGTAGGGAATTGGCTGGCACATAAGGATAAGGATGAATGGTTGAAGGACATGAGGGGAGTGCTGAGTTTGGTGTCTACGGTGATCGCAACAATGACCTTTCAAAGTGCTTTAAATCCACCAGGTGGAGTTAGACCCGGAAACGAGAGTGGAGTTGTTCAATGTCCAGAAAACAGTGCAGATAATAATCCATGTCCCGGAGAATCTATCCTAGCTGTTCTTTACCCTGATGAATATAAAATATTCCTCATTTGGAACACAACATGTTTCATTTCATCTTTAGCAGTGTGTCTCTTGCTTGTAAGTGGGTTCCCTCTCAATCACAGATTCTTCACCTGGCTTTTGTCAATAGGGATGTGCATCACCATCTCCAGCCTCACTCTTACCTACATGACTGGTGCGGGAATGGTCACCCCGGATCCCCTTTGGAATACAACCAACTCCATGTTTAATAAAGTTATTTATATTTGGATTTCACTGCTAGGACTCGTCGCATTTGTCCTTTGCCTACGCCTAATTGTTTGGATTGTCTTTGCCTGCAGGTAATTAAACCTTGAAATCCAATATCCCATGCCATACTTTTAGTATTCAAGAGGTGTGATTTCAATAGGAAACGAGAATGTAACTCATGCTATTCTCTCTATTCTTGTATCATTTTGGTGTAAGCATGTGTGGTAGGCGTGTATAATCTTTGTGATTCTCAAGTCTTTATATATTATGGGATATATTTCTATAATAATCTCCTGTGTTTCGC

Coding sequences of Glyma16g00650

Limit To All Plant Sequences

>Glyma16g00650.2   sequence type=CDS   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGTTGAAAGCGAGAGGAAAGATGAACAAGAGGTGAAAGGGTGGAGAAAAGCTTTAAAAAGTGTAGGGAATTGGCTGGCACATAAGGATAAGGATGAATGGTTGAAGGACATGAGGGGAGTGCTGAGTTTGGTGTCTACGGTGATCGCAACAATGACCTTTCAAAGTGCTTTAAATCCACCAGGTGGAGTTAGACCCGGAAACGAGAGTGGAGTTGTTCAATGTCCAGAAAACAGTGCAGATAATAATCCATGTCCCGGAGAATCTATCCTAGCTGTTCTTTACCCTGATGAATATAAAATATTCCTCATTTGGAACACAACATGTTTCATTTCATCTTTAGCAGTGTGTCTCTTGCTTGTAAGTGGGTTCCCTCTCAATCACAGATTCTTCACCTGGCTTTTGTCAATAGGGATGTGCATCACCATCTCCAGCCTCACTCTTACCTACATGACTGGTGCGGGAATGGTCACCCCGGATCCCCTTTGGAATACAACCAACTCCATGTTTAATAAAGTTATTTATATTTGGATTTCACTGCTAGGACTCGTCGCATTTGTCCTTTGCCTACGCCTAATTGTTTGGATTGTCTTTGCCTGCAGGATTATGGGAAATGGCTATGGCAGTTTCATTGTCAACAAAAATCTGTGTACTCTCCTTCTGCTCCATGTTAAGATCAATCAAGATTTTTTTAAGCCACAAAACTTGGTT

>Glyma16g00650.3   sequence type=CDS   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGTTGAAAGCGAGAGGAAAGATGAACAAGAGGTGAAAGGGTGGAGAAAAGCTTTAAAAAGTGTAGGGAATTGGCTGGCACATAAGGATAAGGATGAATGGTTGAAGGACATGAGGGGAGTGCTGAGTTTGGTGTCTACGGTGATCGCAACAATGACCTTTCAAAGTGCTTTAAATCCACCAGGTGGAGTTAGACCCGGAAACGAGAGTGGAGTTGTTCAATGTCCAGAAAACAGTGCAGATAATAATCCATGTCCCGGAGAATCTATCCTAGCTGTTCTTTACCCTGATGAATATAAAATATTCCTCATTTGGAACACAACATGTTTCATTTCATCTTTAGCAGTGTGTCTCTTGCTTGTAAGTGGGTTCCCTCTCAATCACAGATTCTTCACCTGGCTTTTGTCAATAGGGATGTGCATCACCATCTCCAGCCTCACTCTTACCTACATGACTGGTGCGGGAATGGTCACCCCGGATCCCCTTTGGAATACAACCAACTCCATGTTTAATAAAGTTATTTATATTTGGATTTCACTGCTAGGACTCGTCGCATTTGTCCTTTGCCTACGCCTAATTGTTTGGATTGTCTTTGCCTGCAGGTAA

>Glyma16g00650.4   sequence type=CDS   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGTTGAAAGCGAGAGGAAAGATGAACAAGAGGTGAAAGGGTGGAGAAAAGCTTTAAAAAGTGTAGGGAATTGGCTGGCACATAAGGATAAGGATGAATGGTTGAAGGACATGAGGGGAGTGCTGAGTTTGGTGTCTACGGTGATCGCAACAATGACCTTTCAAAGTGCTTTAAATCCACCAGGTGGAGTTAGACCCGGAAACGAGAGTGGAGTTGTTCAATGTCCAGAAAACAGTGCAGATAATAATCCATGTCCCGGAGAATCTATCCTAGCTGTTCTTTACCCTGATGAATATAAAATATTCCTCATTTGGAACACAACATGTTTCATTTCATCTTTAGCAGTGTGTCTCTTGCTTGTAAGTGGGTTCCCTCTCAATCACAGATTCTTCACCTGGCTTTTGTCAATAGGGATGTGCATCACCATCTCCAGCCTCACTCTTACCTACATGACTGGTGCGGGAATGGTCACCCCGGATCCCCTTTGGAATACAACCAACTCCATGTTTAATAAAGTTATTTATATTTGGATTTCACTGCTAGGACTCGTCGCATTTGTCCTTTGCCTACGCCTAATTGTTTGGATTGTCTTTGCCTGCAGGTAA

Predicted protein sequences of Glyma16g00650

Limit To All Plant Sequences

>Glyma16g00650.2   sequence type=predicted peptide   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVESERKDEQEVKGWRKALKSVGNWLAHKDKDEWLKDMRGVLSLVSTVIATMTFQSALNPPGGVRPGNESGVVQCPENSADNNPCPGESILAVLYPDEYKIFLIWNTTCFISSLAVCLLLVSGFPLNHRFFTWLLSIGMCITISSLTLTYMTGAGMVTPDPLWNTTNSMFNKVIYIWISLLGLVAFVLCLRLIVWIVFACRIMGNGYGSFIVNKNLCTLLLLHVKINQDFFKPQNLV

>Glyma16g00650.3   sequence type=predicted peptide   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVESERKDEQEVKGWRKALKSVGNWLAHKDKDEWLKDMRGVLSLVSTVIATMTFQSALNPPGGVRPGNESGVVQCPENSADNNPCPGESILAVLYPDEYKIFLIWNTTCFISSLAVCLLLVSGFPLNHRFFTWLLSIGMCITISSLTLTYMTGAGMVTPDPLWNTTNSMFNKVIYIWISLLGLVAFVLCLRLIVWIVFACR*

>Glyma16g00650.4   sequence type=predicted peptide   gene model=Glyma16g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVESERKDEQEVKGWRKALKSVGNWLAHKDKDEWLKDMRGVLSLVSTVIATMTFQSALNPPGGVRPGNESGVVQCPENSADNNPCPGESILAVLYPDEYKIFLIWNTTCFISSLAVCLLLVSGFPLNHRFFTWLLSIGMCITISSLTLTYMTGAGMVTPDPLWNTTNSMFNKVIYIWISLLGLVAFVLCLRLIVWIVFACR*

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