Report for Sequence Feature Glyma16g00520
Feature Type: gene_model
Chromosome: Gm16
Start: 194856
stop: 196453
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g00520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G80160 AT
Annotation by Michelle Graham. TAIR10: Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167
SoyBase E_val: 2.00E-63 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0042538 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response
SoyBase N/A ISS
GO:0046482 GO-bp
Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004462 GO-mf
Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity
SoyBase N/A ISS
KOG2944
KOG
Glyoxalase
JGI ISS
PTHR10374 Panther
LACTOYLGLUTATHIONE LYASE
JGI ISS
PTHR10374:SF0 Panther
LACTOYLGLUTATHIONE LYASE (GLYOXALASE I)
JGI ISS
PF00903 PFAM
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
JGI ISS
UniRef100_G7IN97 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Metallothiol transferase fosB n=1 Tax=Medicago truncatula RepID=G7IN97_MEDTR
SoyBase E_val: 8.00E-89 ISS
UniRef100_I1MJW0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJW0_SOYBN
SoyBase E_val: 6.00E-130 ISS
Expression Patterns of Glyma16g00520
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma16g00520
Paralog Evidence Comments
Glyma12g28870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g00520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g003500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g00520
Coding sequences of Glyma16g00520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g00520.1 sequence type=CDS gene model=Glyma16g00520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAAAATGGAACCTCTACCTTTGCTTTCACTAAACCACGTTTCTTTTGTATGTAAGAGTGTGAGTGAGTCTGTGAAATTCTACCAGGATGTCCTTGGATTTGTGCTCATCAAGAGGCCATCTTCTTTCAAATTTGAAGGGGCTTGGTTATTCAATTATGGCATTGGCATTCACCTGCTAGAGTCAGAAAAGGTTCCGGTGGAAAAAAGAGAGATCAACCCGAAAGAAAATCATATATCGTTTCAATGCTCAGACATGAAAGTTATAATGCAGAAACTGGATGCAATGAAGATTGAGTATGTGAGAGCAGTTGTGGAAGAGGGTGGAATTAAAGTTGATCAGCTCTTCTTTCATGACCCAGATGGATATATGATAGAAATATGCAACTGCCAAAATCTCCCTGTGCTTCCCATTTCCTCATGCCCTCTAAAGCAGCTCGCAGCAGGGGAAGCTACTACATTGAACATTAACTGCTTTGCAGACGAATCTGTGTCTATGCTGATGATGGACAATTTGGTGATGGATATGTTGAAGATTTCAATATAA
Predicted protein sequences of Glyma16g00520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g00520.1 sequence type=predicted peptide gene model=Glyma16g00520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKMEPLPLLSLNHVSFVCKSVSESVKFYQDVLGFVLIKRPSSFKFEGAWLFNYGIGIHLLESEKVPVEKREINPKENHISFQCSDMKVIMQKLDAMKIEYVRAVVEEGGIKVDQLFFHDPDGYMIEICNCQNLPVLPISSCPLKQLAAGEATTLNINCFADESVSMLMMDNLVMDMLKISI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
