SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49960 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| PF06241 | PFAM | Protein of unknown function (DUF1012) | JGI | ISS | |
| UniRef100_I1MJV9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJV9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6RHR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ion channel DMI1 n=17 Tax=Medicago truncatula RepID=DMI1_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma16g00500 not represented in the dataset |
Glyma16g00500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g28860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g003300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g00500.2 sequence type=transcript gene model=Glyma16g00500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCGATTTTGAGATGCAAAAGATGTAAATTTGATCTATGAAATAAGACTAATCTAACATTCAGAGTTATGCTTCATTTTGGACCATTTATAATATTGGTCCACTTAAAGTAATGTCCTAAAATCAATATTAAAGATTTTTCTTTTCTTTTTCTAACCATGTAGTAATCTTCAACATTTTGTCCTACTTAAGAAGGCAAGTAATCCTCCTGTTGTTGATGGGAATCATTTTGAAGGTAGAAACAGAAAAAAAACTGAAATTTGAAGAAAGGTTGATTGGGTGAGTATCCATTCCACGTCAACATGACAGAAAAAGTGAAAAAGACTACATTCTTAAAACACAGAAGCAGAGGTTGTTCTTCTTCTGTTTCAACTTTCCAACAACAATAGAATAGAATTCAGCACACACAACACATTCTCTTTCTTTGTAGATCCCACTCAACTCACTCAGGACCCATCCCTCAGCATCTGAGAGAGAGCCCCACAAACACAAAGGGAATCTGTCTCAACTCAACTCAGCTCAGTGCAGAATGCGAAAGAGCAATGAGGAATTTCCGAATCTGAGTCTAAGGAAGCCACCCTTAAAGAGGAGCAAGACAATTCCAAATCCAAAACACACCCATTTCTCTGTCTCTGTCTCTGACTCCGACGAGCAATGGAACTACCCTTCTTTTCTTGGCACCACCACCAAGAAAAAAAAAACATCTTTCAAACCCCACAACCTCAACCTTCCCAAACCCTCACTTGTTCCACCACCGCCACCACCACCTCCTCCTCCTCCTTCCACATCCTCGTCGCCACTCTCTTCACAAGTCACCAGACCTCAACACCATCAGCGCTCTCCGATCTTGTATCTGCTTTTTATTGCTTCTATTGTTTTTGTACCCCATTCCGCTTATCTACAATATAAGCTCACAAAACTGGAGGATGAGAAACTTAACCTGTGCTGCCAAATTGACTTTTGTCCTGGCAATGAAAGGACATCTTTACAAAAAGTTGATGGTTCATTTTCTTATATCCTGAACGCTGACAGTAGAACAGTTGCTTTGTATATTGTGGTGGTCACCCTCATTTTACCTTTTATGTTGTACAAATATCTTGATTACCTTCCTCAAATAGTAAATTTCTTGAGGAGAACAAACAATAACAAGGAGGATGTACCGTTGAAGAAGAGGGTTGCTTATATGGTAGATGTGTTTTTCTCCATATATCCTTATGCAAAGCTGCTCGCCCTTCTCTTTGCAACTCTATTTCTTATAGGCTTTGGTGGTTTAGCCTTGTATGCGGTGACTGGTGGTAGCCTTGCTGAGGCACTTTGGCATTCTTGGACTTATGTAGCTGACTCAGGAAATCATGCTGAAACAGAAGGAACCGGGCAGAGGATTGTCTCTGTCTCAATTAGTTCAGGTGGTATGTTGATATTTGCTATGATGCTTGGGCTAGTTTCAGATGCTATATCAGAGAAGGTAGATTCTCTCAGAAAAGGGAAGAGTGAAGTGATTGAAAAAAACCACATACTCATTCTTGGTTGGAGTGACAAATTGGGCTCACTTTTGAAGCAGTTAGCAATAGCAAATAAGAGTATTGGTGGTGGTGTTATTGTGGTGCTTGCAGAAAAAGAAAAGGAGGAAATGGAAATGGACATAGCAAAGTTGGAATTTGATTTCATGGGAACATCCGTAATTTGTAGAAGTGGCAGTCCTCTTATACTGGCTGACCTAAAGAAGGTTTCAGTTTCTAAGGCACGTGCAATCATTGTATTAGCTTCAGATGAAAATGCAGATCAGAGTGATGCACGTGCTTTGAGAGTTGTTCTTAGCCTAACAGGTGTAAGGGAGGGCTTAGGGGGTCATGTTGTTGTGGAGATGAGTGACCTTGACAACGAACCTCTGGTGAAACTTGTTGGCGGAGAACTCATTGAAACAGTTGTTGCACATGATGTAATTGGACGTTTGATGATTCAGTGTGCTCTACAGCCTGGCCTTGCACAGATATGGGAGGATATTTTGGGATTTGAGAATGCGGAGTTTTACATCAAAAGGTGGCCTGAACTGGATGGTCTCTTTTTCAAAGATGTATTAATTTCATTTCCTGATGCAATACCTTGTGGAGTTAAGGTTGCTGCAGATGGGGGCATGATTATCATCAACCCAGATGATAGTTATGTCCTGAGAGATGGGGATGAAGTCCTTGTCATAGCTGAGGATGATGACACTTACGCACCAGGTCCTCTTCCAGAGGTACATAAGGGACTTTGTTCAAGGATACATGATCCACCTAAGTATCCTGACAAGATATTGTTTTGTGGCTGGCGTCGTGATATTGATGATATGATCATGGTTTTAGAGGCACTCTTGGCTCCTGGTTCAGAACTTTGGATGTTCAATGAGGTTCCTGAAAAGGAAAGAGAAAAGAAGCTTGTTGATGGTGGACTTGATGTTTCTGAGTTAGAGAACATAAAACTTGTCCATAGGGAGGGTAATGCTGTGATTAGGCGGCACCTGGAGGGTCTTCCACTGGAGACTTTTGATTCTATCCTTATTCTTGCAGATGAGTCAGTGGAGGACTCTGTAGCTCACTCTGACTCAAGGTCCCTAGCTACCCTTCTACTCATTCGGGACATACAGGTATCCAGTTTTGTTGCATTTGAAATTAAGGTTATCATGTTCACATCACTGACTATTGTCTCATGTTGTGGTAGTCAAAACGTCTACCATACAAAGACACTGGGTTCTCTCACAACTCTTGGATCCGTGACATGCAGCAAGCTTCAGTTAAATCAATTATAATTAGTGAAATTTTAGATTCTAGGACTAGAAATCTAGTGTCTGTGTCAAGAATCAGTGATTATGTGTTATCTAATGAGCTGGTTAGCATGGCACTAGCAATGGTGGCAGAAGACAAGCAAATTAACCGTGTTCTTGAGGAATTATTTGCAGAGGAGGGGAACGAGATGTGTACGAAAGCAGCAGAGTTGTATTTATTTGACAAGGAAGAAGTGTGTTTCTATGATATAATGATTAGGGGTCGTACAAGAAACGAGATTGTTATCGGCTATCGCCTGGCTAACCAAGATCGAGCTATTATCAACCCTTCTCAAAAGTCGCTGCCAAGAATATGGTCCATTGCTGATGTTTTTGTTGTTATTGCCAAAGGAGATTGACAATTTCAAACATTTCTTTTTTTTAGAATATGGATATTAAAATTAATTTACAATTTTTTTTTTGTAATTAATTTATGAAATTTAATTATAAATTAGTAAAATAGAAATATATAAA
>Glyma16g00500.1 sequence type=CDS gene model=Glyma16g00500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAAGAGCAATGAGGAATTTCCGAATCTGAGTCTAAGGAAGCCACCCTTAAAGAGGAGCAAGACAATTCCAAATCCAAAACACACCCATTTCTCTGTCTCTGTCTCTGACTCCGACGAGCAATGGAACTACCCTTCTTTTCTTGGCACCACCACCAAGAAAAAAAAAACATCTTTCAAACCCCACAACCTCAACCTTCCCAAACCCTCACTTGTTCCACCACCGCCACCACCACCTCCTCCTCCTCCTTCCACATCCTCGTCGCCACTCTCTTCACAAGTCACCAGACCTCAACACCATCAGCGCTCTCCGATCTTGTATCTGCTTTTTATTGCTTCTATTGTTTTTGTACCCCATTCCGCTTATCTACAATATAAGCTCACAAAACTGGAGGATGAGAAACTTAACCTGTGCTGCCAAATTGACTTTTGTCCTGGCAATGAAAGGACATCTTTACAAAAAGTTGATGGTTCATTTTCTTATATCCTGAACGCTGACAGTAGAACAGTTGCTTTGTATATTGTGGTGGTCACCCTCATTTTACCTTTTATGTTGTACAAATATCTTGATTACCTTCCTCAAATAGTAAATTTCTTGAGGAGAACAAACAATAACAAGGAGGATGTACCGTTGAAGAAGAGGGTTGCTTATATGGTAGATGTGTTTTTCTCCATATATCCTTATGCAAAGCTGCTCGCCCTTCTCTTTGCAACTCTATTTCTTATAGGCTTTGGTGGTTTAGCCTTGTATGCGGTGACTGGTGGTAGCCTTGCTGAGGCACTTTGGCATTCTTGGACTTATGTAGCTGACTCAGGAAATCATGCTGAAACAGAAGGAACCGGGCAGAGGATTGTCTCTGTCTCAATTAGTTCAGGTGGTATGTTGATATTTGCTATGATGCTTGGGCTAGTTTCAGATGCTATATCAGAGAAGGTAGATTCTCTCAGAAAAGGGAAGAGTGAAGTGATTGAAAAAAACCACATACTCATTCTTGGTTGGAGTGACAAATTGGGCTCACTTTTGAAGCAGTTAGCAATAGCAAATAAGAGTATTGGTGGTGGTGTTATTGTGGTGCTTGCAGAAAAAGAAAAGGAGGAAATGGAAATGGACATAGCAAAGTTGGAATTTGATTTCATGGGAACATCCGTAATTTGTAGAAGTGGCAGTCCTCTTATACTGGCTGACCTAAAGAAGGTTTCAGTTTCTAAGGCACGTGCAATCATTGTATTAGCTTCAGATGAAAATGCAGATCAGAGTGATGCACGTGCTTTGAGAGTTGTTCTTAGCCTAACAGGTGTAAGGGAGGGCTTAGGGGGTCATGTTGTTGTGGAGATGAGTGACCTTGACAACGAACCTCTGGTGAAACTTGTTGGCGGAGAACTCATTGAAACAGTTGTTGCACATGATGTAATTGGACGTTTGATGATTCAGTGTGCTCTACAGCCTGGCCTTGCACAGATATGGGAGGATATTTTGGGATTTGAGAATGCGGAGTTTTACATCAAAAGGTGGCCTGAACTGGATGGTCTCTTTTTCAAAGATGTATTAATTTCATTTCCTGATGCAATACCTTGTGGAGTTAAGGTTGCTGCAGATGGGGGCATGATTATCATCAACCCAGATGATAGTTATGTCCTGAGAGATGGGGATGAAGTCCTTGTCATAGCTGAGGATGATGACACTTACGCACCAGGTCCTCTTCCAGAGGTACATAAGGGACTTTGTTCAAGGATACATGATCCACCTAAGTATCCTGACAAGATATTGTTTTGTGGCTGGCGTCGTGATATTGATGATATGATCATGGTTTTAGAGGCACTCTTGGCTCCTGGTTCAGAACTTTGGATGTTCAATGAGGTTCCTGAAAAGGAAAGAGAAAAGAAGCTTGTTGATGGTGGACTTGATGTTTCTGAGTTAGAGAACATAAAACTTGTCCATAGGGAGGGTAATGCTGTGATTAGGCGGCACCTGGAGGGTCTTCCACTGGAGACTTTTGATTCTATCCTTATTCTTGCAGATGAGTCAGTGGAGGACTCTGTAGCTCACTCTGACTCAAGGTCCCTAGCTACCCTTCTACTCATTCGGGACATACAGTCAAAACGTCTACCATACAAAGACACTGGGTTCTCTCACAACTCTTGGATCCGTGACATGCAGCAAGCTTCAGTTAAATCAATTATAATTAGTGAAATTTTAGATTCTAGGACTAGAAATCTAGTGTCTGTGTCAAGAATCAGTGATTATGTGTTATCTAATGAGCTGGTTAGCATGGCACTAGCAATGGTGGCAGAAGACAAGCAAATTAACCGTGTTCTTGAGGAATTATTTGCAGAGGAGGGGAACGAGATGTGTACGAAAGCAGCAGAGTTGTATTTATTTGACAAGGAAGAAGTGTGTTTCTATGATATAATGATTAGGGGTCGTACAAGAAACGAGATTGTTATCGGCTATCGCCTGGCTAACCAAGATCGAGCTATTATCAACCCTTCTCAAAAGTCGCTGCCAAGAATATGGTCCATTGCTGATGTTTTTGTTGTTATTGCCAAAGGAGATTGA >Glyma16g00500.2 sequence type=CDS gene model=Glyma16g00500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAAGAGCAATGAGGAATTTCCGAATCTGAGTCTAAGGAAGCCACCCTTAAAGAGGAGCAAGACAATTCCAAATCCAAAACACACCCATTTCTCTGTCTCTGTCTCTGACTCCGACGAGCAATGGAACTACCCTTCTTTTCTTGGCACCACCACCAAGAAAAAAAAAACATCTTTCAAACCCCACAACCTCAACCTTCCCAAACCCTCACTTGTTCCACCACCGCCACCACCACCTCCTCCTCCTCCTTCCACATCCTCGTCGCCACTCTCTTCACAAGTCACCAGACCTCAACACCATCAGCGCTCTCCGATCTTGTATCTGCTTTTTATTGCTTCTATTGTTTTTGTACCCCATTCCGCTTATCTACAATATAAGCTCACAAAACTGGAGGATGAGAAACTTAACCTGTGCTGCCAAATTGACTTTTGTCCTGGCAATGAAAGGACATCTTTACAAAAAGTTGATGGTTCATTTTCTTATATCCTGAACGCTGACAGTAGAACAGTTGCTTTGTATATTGTGGTGGTCACCCTCATTTTACCTTTTATGTTGTACAAATATCTTGATTACCTTCCTCAAATAGTAAATTTCTTGAGGAGAACAAACAATAACAAGGAGGATGTACCGTTGAAGAAGAGGGTTGCTTATATGGTAGATGTGTTTTTCTCCATATATCCTTATGCAAAGCTGCTCGCCCTTCTCTTTGCAACTCTATTTCTTATAGGCTTTGGTGGTTTAGCCTTGTATGCGGTGACTGGTGGTAGCCTTGCTGAGGCACTTTGGCATTCTTGGACTTATGTAGCTGACTCAGGAAATCATGCTGAAACAGAAGGAACCGGGCAGAGGATTGTCTCTGTCTCAATTAGTTCAGGTGGTATGTTGATATTTGCTATGATGCTTGGGCTAGTTTCAGATGCTATATCAGAGAAGGTAGATTCTCTCAGAAAAGGGAAGAGTGAAGTGATTGAAAAAAACCACATACTCATTCTTGGTTGGAGTGACAAATTGGGCTCACTTTTGAAGCAGTTAGCAATAGCAAATAAGAGTATTGGTGGTGGTGTTATTGTGGTGCTTGCAGAAAAAGAAAAGGAGGAAATGGAAATGGACATAGCAAAGTTGGAATTTGATTTCATGGGAACATCCGTAATTTGTAGAAGTGGCAGTCCTCTTATACTGGCTGACCTAAAGAAGGTTTCAGTTTCTAAGGCACGTGCAATCATTGTATTAGCTTCAGATGAAAATGCAGATCAGAGTGATGCACGTGCTTTGAGAGTTGTTCTTAGCCTAACAGGTGTAAGGGAGGGCTTAGGGGGTCATGTTGTTGTGGAGATGAGTGACCTTGACAACGAACCTCTGGTGAAACTTGTTGGCGGAGAACTCATTGAAACAGTTGTTGCACATGATGTAATTGGACGTTTGATGATTCAGTGTGCTCTACAGCCTGGCCTTGCACAGATATGGGAGGATATTTTGGGATTTGAGAATGCGGAGTTTTACATCAAAAGGTGGCCTGAACTGGATGGTCTCTTTTTCAAAGATGTATTAATTTCATTTCCTGATGCAATACCTTGTGGAGTTAAGGTTGCTGCAGATGGGGGCATGATTATCATCAACCCAGATGATAGTTATGTCCTGAGAGATGGGGATGAAGTCCTTGTCATAGCTGAGGATGATGACACTTACGCACCAGGTCCTCTTCCAGAGGTACATAAGGGACTTTGTTCAAGGATACATGATCCACCTAAGTATCCTGACAAGATATTGTTTTGTGGCTGGCGTCGTGATATTGATGATATGATCATGGTTTTAGAGGCACTCTTGGCTCCTGGTTCAGAACTTTGGATGTTCAATGAGGTTCCTGAAAAGGAAAGAGAAAAGAAGCTTGTTGATGGTGGACTTGATGTTTCTGAGTTAGAGAACATAAAACTTGTCCATAGGGAGGGTAATGCTGTGATTAGGCGGCACCTGGAGGGTCTTCCACTGGAGACTTTTGATTCTATCCTTATTCTTGCAGATGAGTCAGTGGAGGACTCTGTAGCTCACTCTGACTCAAGGTCCCTAGCTACCCTTCTACTCATTCGGGACATACAGGTATCCAGTTTTGTTGCATTTGAAATTAAGGTTATCATGTTCACATCACTGACTATTGTCTCATGTTGTGGTAGTCAAAACGTCTACCATACAAAGACACTGGGTTCTCTCACAACTCTTGGATCCGTGACATGCAGCAAGCTTCAGTTAAATCAATTATAA
>Glyma16g00500.1 sequence type=predicted peptide gene model=Glyma16g00500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKSNEEFPNLSLRKPPLKRSKTIPNPKHTHFSVSVSDSDEQWNYPSFLGTTTKKKKTSFKPHNLNLPKPSLVPPPPPPPPPPPSTSSSPLSSQVTRPQHHQRSPILYLLFIASIVFVPHSAYLQYKLTKLEDEKLNLCCQIDFCPGNERTSLQKVDGSFSYILNADSRTVALYIVVVTLILPFMLYKYLDYLPQIVNFLRRTNNNKEDVPLKKRVAYMVDVFFSIYPYAKLLALLFATLFLIGFGGLALYAVTGGSLAEALWHSWTYVADSGNHAETEGTGQRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAIANKSIGGGVIVVLAEKEKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVREGLGGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPELDGLFFKDVLISFPDAIPCGVKVAADGGMIIINPDDSYVLRDGDEVLVIAEDDDTYAPGPLPEVHKGLCSRIHDPPKYPDKILFCGWRRDIDDMIMVLEALLAPGSELWMFNEVPEKEREKKLVDGGLDVSELENIKLVHREGNAVIRRHLEGLPLETFDSILILADESVEDSVAHSDSRSLATLLLIRDIQSKRLPYKDTGFSHNSWIRDMQQASVKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCTKAAELYLFDKEEVCFYDIMIRGRTRNEIVIGYRLANQDRAIINPSQKSLPRIWSIADVFVVIAKGD* >Glyma16g00500.2 sequence type=predicted peptide gene model=Glyma16g00500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKSNEEFPNLSLRKPPLKRSKTIPNPKHTHFSVSVSDSDEQWNYPSFLGTTTKKKKTSFKPHNLNLPKPSLVPPPPPPPPPPPSTSSSPLSSQVTRPQHHQRSPILYLLFIASIVFVPHSAYLQYKLTKLEDEKLNLCCQIDFCPGNERTSLQKVDGSFSYILNADSRTVALYIVVVTLILPFMLYKYLDYLPQIVNFLRRTNNNKEDVPLKKRVAYMVDVFFSIYPYAKLLALLFATLFLIGFGGLALYAVTGGSLAEALWHSWTYVADSGNHAETEGTGQRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAIANKSIGGGVIVVLAEKEKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVREGLGGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPELDGLFFKDVLISFPDAIPCGVKVAADGGMIIINPDDSYVLRDGDEVLVIAEDDDTYAPGPLPEVHKGLCSRIHDPPKYPDKILFCGWRRDIDDMIMVLEALLAPGSELWMFNEVPEKEREKKLVDGGLDVSELENIKLVHREGNAVIRRHLEGLPLETFDSILILADESVEDSVAHSDSRSLATLLLIRDIQVSSFVAFEIKVIMFTSLTIVSCCGSQNVYHTKTLGSLTTLGSVTCSKLQLNQL*
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