Glyma16g00490 - SoyBase

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Report for Sequence Feature Glyma16g00490

Feature Type:	gene_model
Chromosome:	Gm16
Start:	173035
stop:	178836
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g00490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09810	AT	Annotation by Michelle Graham. TAIR10: evolutionarily conserved C-terminal region 11 \| chr1:3181138-3183354 REVERSE LENGTH=470	SoyBase	E_val: 2.00E-92	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12357	Panther	YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING	JGI		ISS
PTHR12357:SF6	Panther	YTH DOMAIN-CONTAINING	JGI		ISS
PF04146	PFAM	YT521-B-like family	JGI		ISS
UniRef100_G7IN94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: YTH domain family protein n=1 Tax=Medicago truncatula RepID=G7IN94_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MJV6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MJV6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g00490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g00490 not represented in the dataset	Glyma16g00490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g00490

Paralog	Evidence	Comments
Glyma12g28846	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g00490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g003200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g00490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g00490

Limit To All Plant Sequences

>Glyma16g00490.2   sequence type=transcript   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTTAACAATCTGAAGTAAATCTGATGATGTGGGTAGATATAGGTTTCAGTGAATCGGGGCGATTTTATTTGGCTTTTCTCTTTCAGATATTTATGTTTTATCTATTCTATACTTAACTATGTGATATAGCTCAATCTCTCTCTAAAGGAACTACAGATCATAGTCAGCATCAGAACAAGGAAGATGTGGTTTCTATAAAAGATTGTATCTCACCGGACTTGACATCATTTGCGACCTCCTCTGGAGATGTTGCTGCTGGTTTCACAGGTGTGCATGAATCAGAAGCCCTGTCTTGTTATTCATCAGTCTCAACTTCTGTTGGCGTGCAAAGCAAAACTGTCAAGGGTTCTGTAATTGCCAAAAATAATCCTAAATCTTCTGGTTTAATGAAGCCAAACAAGTTAAAGTCTACACATAGAAATGGGATTTTAACCAGCACGATATCTGAGACTGTGGCTGATACAGGAAAAGATATCAAAATTCTAAACAAGGCTCCTCATTTGCGTTCTAATTTTCCAGCAGCCACTGCTCCAAATACATATCACCAAATAGGAAAATTTTCATCATTAGCCAACCCAACATGCCATGTTTCCCCCCCCACAAACCACAGGCCAAATACCTCTACTAACTACAGACCAACTGGGAGAGTGTCTAATGTAAATGATCGAGTTTTGTTGGGTGACAACAAATTCAGGAGTGGACAATCTGAAATGTCAATGGAGATGACTCGGGGTCCTCGGGGTCATTACAACAATTTTCTTCTACAACCATCACTTGTTAAGGATGCACTTGCAATCACAATATGTAGAGACGAATATAACCTTTCAGATTTCCAAACTGAATACGAAATTGCTAAATTTTATGTGATTAAATCTTTCAATGAAGATGACGTTCATAAGAGTGTTAAATATAATGTTTGGACAAGTACTCCAAATGGAAATAAGAAGTTGAACGCCGCATTCCTTGATGCAGAAGCTAAATTGAGACAGACAGGGACTAAGTGTCCAGTTTTCCTCTTCTTCTCGGTTAATGCTAGCAGACAGTTTGTTGGAGTGGCTGAGATGCTTGGACCGGTGGACTTTAAAAACGACATGAACTTTTGGAAACTTGATAAGTACAACGGTTTCTTCCCAATTAAGTGGCACATAATAAAAGATGTTCCCAACAATCAGTTTGTGCATATCATCCTTCCAAGCAATGAGAACAAGCCTGTAACTTACACTAGGGACACACAAGAGATTGGATTGAAGGAGGGCCTGGAGATGCTGAATATTTTTAGAAGTTATACAGCTAAGACATCTCTATTGGATGATTTTGACTTCTATGAGAGGCGAGAAAAGTTATTTCGTTCCCAGAGGAGTACTAAGCACAAGCATGCAAGGCCGGAACAGGAAGTATATGGCAATGACAATTATCAAAACACTGTCAAAGCCAGAGAGAAGAAAATGGAGATGCAATCGAGTGGTACCAAGCAAGGTACTCTCATCAAACATACCAAAAACCTTTCTCTCAACAACTCTGGATTTAGATAGCAAGATTGGGAGAGGAGAAAAAGAGAGCCCGATATTTATTTCTACACGTATGTAGGCATTTAAGAGTTGCAGACGCAATTGCAGTTTGGTTTGTTTAGAGCTTCTGAAGCACACGCACGCTTCCTTTTTGATTTGTGTGATATGCCGATAAGATGACCACGACAACACATTTTAAGTTTGACCAATTATTTTTATATTACTCAATGAGTTGATGTTTGCCATTGGCAAATGAGGAGGTATTTGATAGTATGGTTCGATGTCTCCAATATTTCCGTATAACTCATTGGCTTTGGTCTGTATTTACTATTTTGTTTCACGTGGATGAGCGCCCAGTTCCATAGTTGTGTTTTGTTTGGTTGATTTCCTTTTGTTGATTATTCGATTGCATTATTTTCTTAGTTTACCAATGATAAATACTACACGTTGTTTATTTTTCTCTCAAGAATTTGCAAAAATAATAAAATTTATTGATTTTATTC

>Glyma16g00490.3   sequence type=transcript   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTCAAAATTGTATTATTATCACACATATCCATTAACAAAACTACAAATAGCGTGTGGCTAACGCCAAGTGACCAATTCCAATTGTGTTTTTCTCAATCCAAACAAACAGTTTCTAGTTTCTGGGCTATAGTACTAGGGTTTCTTCTTCTCTTCTCTTCCTCCGCTAACACATACAGTAGTACTTTTCTGCAACTTAATCTATTCTCACCAGATCAATCCAAACAGTTTTGTTCATGAGAATTAGCTCTCTCTAACCTAACTTGTTTCTTCTATATTTTAGGATGCGCTTGCTTCTATATTGTTGATCATGAACCGTCACGACCAATTTCAGAAACCTCAATCTCTCTCTAAAGGAACTACAGATCATAGTCAGCATCAGAACAAGGAAGATGTGGTTTCTATAAAAGATTGTATCTCACCGGACTTGACATCATTTGCGACCTCCTCTGGAGATGTTGCTGCTGGTTTCACAGGCTCCTCATTTGCGTTCTAATTTTCCAGCAGCCACTGCTCCAAATACATATCACCAAATAGGAAAATTTTCATCATTAGCCAACCCAACATGCCATGTTTCCCCCCCCACAAACCACAGGCCAAATACCTCTACTAACTACAGACCAACTGGGAGAGTGTCTAATGTAAATGATCGAGTTTTGTTGGGTGACAACAAATTCAGGAGTGGACAATCTGAAATGTCAATGGAGATGACTCGGGGTCCTCGGGGTCATTACAACAATTTTCTTCTACAACCATCACTTGTTAAGGATGCACTTGCAATCACAATATGTAGAGACGAATATAACCTTTCAGATTTCCAAACTGAATACGAAATTGCTAAATTTTATGTGATTAAATCTTTCAATGAAGATGACGTTCATAAGAGTGTTAAATATAATGTTTGGACAAGTACTCCAAATGGAAATAAGAAGTTGAACGCCGCATTCCTTGATGCAGAAGCTAAATTGAGACAGACAGGGACTAAGTGTCCAGTTTTCCTCTTCTTCTCGGTTAATGCTAGCAGACAGTTTGTTGGAGTGGCTGAGATGCTTGGACCGGTGGACTTTAAAAACGACATGAACTTTTGGAAACTTGATAAGTACAACGGTTTCTTCCCAATTAAGTGGCACATAATAAAAGATGTTCCCAACAATCAGTTTGTGCATATCATCCTTCCAAGCAATGAGAACAAGCCTGTAACTTACACTAGGGACACACAAGAGATTGGATTGAAGGAGGGCCTGGAGATGCTGAATATTTTTAGAAGTTATACAGCTAAGACATCTCTATTGGATGATTTTGACTTCTATGAGAGGCGAGAAAAGTTATTTCGTTCCCAGAGGAGTACTAAGCACAAGCATGCAAGGCCGGAACAGGAAGTATATGGCAATGACAATTATCAAAACACTGTCAAAGCCAGAGAGAAGAAAATGGAGATGCAATCGAGTGGTACCAAGCAAGGTACTCTCATCAAACATACCAAAAACCTTTCTCTCAACAACTCTGGATTTAGATAGCAAGATTGGGAGAGGAGAAAAAGAGAGCCCGATATTTATTTCTACACGTATGTAGGCATTTAAGAGTTGCAGACGCAATTGCAGTTTGGTTTGTTTAGAGCTTCTGAAGCACACGCACGCTTCCTTTTTGATTTGTGTGATATGCCGATAAGATGACCACGACAACACATTTTAAGTTTGACCAATTATTTTTATATTACTCAATGAGTTGATGTTTGCCATTGGCAAATGAGGAGGTATTTGATAGTATGGTTCGATGTCTCCAATATTTCCGTATAACTCATTGGCTTTGGTCTGTATTTACTATTTTGTTTCACGTGGATGAGCGCCCAGTTCCATAGTTGTGTTTTGTTTGGTTGATTTCCTTTTGTTGATTATTCGATTGCATTATTTTCTTAGTTTACCAATGATAAATACTACACGTTGTTTATTTTTCTCTCAAGAATTTGCAAAAATAATAAAATTTATTGATTTTATTC

Coding sequences of Glyma16g00490

Limit To All Plant Sequences

>Glyma16g00490.1   sequence type=CDS   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCGTCACGACCAATTTCAGAAACCTCAATCTCTCTCTAAAGGAACTACAGATCATAGTCAGCATCAGAACAAGGAAGATGTGGTTTCTATAAAAGATTGTATCTCACCGGACTTGACATCATTTGCGACCTCCTCTGGAGATGTTGCTGCTGGTTTCACAGGTGTGCATGAATCAGAAGCCCTGTCTTGTTATTCATCAGTCTCAACTTCTGTTGGCGTGCAAAGCAAAACTGTCAAGGGTTCTGTAATTGCCAAAAATAATCCTAAATCTTCTGGTTTAATGAAGCCAAACAAGTTAAAGTCTACACATAGAAATGGGATTTTAACCAGCACGATATCTGAGACTGTGGCTGATACAGGAAAAGATATCAAAATTCTAAACAAGGCTCCTCATTTGCGTTCTAATTTTCCAGCAGCCACTGCTCCAAATACATATCACCAAATAGGAAAATTTTCATCATTAGCCAACCCAACATGCCATGTTTCCCCCCCCACAAACCACAGGCCAAATACCTCTACTAACTACAGACCAACTGGGAGAGTGTCTAATGTAAATGATCGAGTTTTGTTGGGTGACAACAAATTCAGGAGTGGACAATCTGAAATGTCAATGGAGATGACTCGGGGTCCTCGGGGTCATTACAACAATTTTCTTCTACAACCATCACTTGTTAAGGATGCACTTGCAATCACAATATGTAGAGACGAATATAACCTTTCAGATTTCCAAACTGAATACGAAATTGCTAAATTTTATGTGATTAAATCTTTCAATGAAGATGACGTTCATAAGAGTGTTAAATATAATGTTTGGACAAGTACTCCAAATGGAAATAAGAAGTTGAACGCCGCATTCCTTGATGCAGAAGCTAAATTGAGACAGACAGGGACTAAGTGTCCAGTTTTCCTCTTCTTCTCGGTTAATGCTAGCAGACAGTTTGTTGGAGTGGCTGAGATGCTTGGACCGGTGGACTTTAAAAACGACATGAACTTTTGGAAACTTGATAAGTACAACGGTTTCTTCCCAATTAAGTGGCACATAATAAAAGATGTTCCCAACAATCAGTTTGTGCATATCATCCTTCCAAGCAATGAGAACAAGCCTGTAACTTACACTAGGGACACACAAGAGATTGGATTGAAGGAGGGCCTGGAGATGCTGAATATTTTTAGAAGTTATACAGCTAAGACATCTCTATTGGATGATTTTGACTTCTATGAGAGGCGAGAAAAGTTATTTCGTTCCCAGAGGAGTACTAAGCACAAGCATGCAAGGCCGGAACAGGAAGTATATGGCAATGACAATTATCAAAACACTGTCAAAGCCAGAGAGAAGAAAATGGAGATGCAATCGAGTGGTACCAAGCAAGGTACTCTCATCAAACATACCAAAAACCTTTCTCTCAACAACTCTGGATTTAGATAG

>Glyma16g00490.2   sequence type=CDS   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCAAACAAGTTAAAGTCTACACATAGAAATGGGATTTTAACCAGCACGATATCTGAGACTGTGGCTGATACAGGAAAAGATATCAAAATTCTAAACAAGGCTCCTCATTTGCGTTCTAATTTTCCAGCAGCCACTGCTCCAAATACATATCACCAAATAGGAAAATTTTCATCATTAGCCAACCCAACATGCCATGTTTCCCCCCCCACAAACCACAGGCCAAATACCTCTACTAACTACAGACCAACTGGGAGAGTGTCTAATGTAAATGATCGAGTTTTGTTGGGTGACAACAAATTCAGGAGTGGACAATCTGAAATGTCAATGGAGATGACTCGGGGTCCTCGGGGTCATTACAACAATTTTCTTCTACAACCATCACTTGTTAAGGATGCACTTGCAATCACAATATGTAGAGACGAATATAACCTTTCAGATTTCCAAACTGAATACGAAATTGCTAAATTTTATGTGATTAAATCTTTCAATGAAGATGACGTTCATAAGAGTGTTAAATATAATGTTTGGACAAGTACTCCAAATGGAAATAAGAAGTTGAACGCCGCATTCCTTGATGCAGAAGCTAAATTGAGACAGACAGGGACTAAGTGTCCAGTTTTCCTCTTCTTCTCGGTTAATGCTAGCAGACAGTTTGTTGGAGTGGCTGAGATGCTTGGACCGGTGGACTTTAAAAACGACATGAACTTTTGGAAACTTGATAAGTACAACGGTTTCTTCCCAATTAAGTGGCACATAATAAAAGATGTTCCCAACAATCAGTTTGTGCATATCATCCTTCCAAGCAATGAGAACAAGCCTGTAACTTACACTAGGGACACACAAGAGATTGGATTGAAGGAGGGCCTGGAGATGCTGAATATTTTTAGAAGTTATACAGCTAAGACATCTCTATTGGATGATTTTGACTTCTATGAGAGGCGAGAAAAGTTATTTCGTTCCCAGAGGAGTACTAAGCACAAGCATGCAAGGCCGGAACAGGAAGTATATGGCAATGACAATTATCAAAACACTGTCAAAGCCAGAGAGAAGAAAATGGAGATGCAATCGAGTGGTACCAAGCAAGGTACTCTCATCAAACATACCAAAAACCTTTCTCTCAACAACTCTGGATTTAGATAG

>Glyma16g00490.3   sequence type=CDS   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCTGCTGGTTTCACAGGCTCCTCATTTGCGTTCTAATTTTCCAGCAGCCACTGCTCCAAATACATATCACCAAATAGGAAAATTTTCATCATTAGCCAACCCAACATGCCATGTTTCCCCCCCCACAAACCACAGGCCAAATACCTCTACTAACTACAGACCAACTGGGAGAGTGTCTAATGTAAATGATCGAGTTTTGTTGGGTGACAACAAATTCAGGAGTGGACAATCTGAAATGTCAATGGAGATGACTCGGGGTCCTCGGGGTCATTACAACAATTTTCTTCTACAACCATCACTTGTTAAGGATGCACTTGCAATCACAATATGTAGAGACGAATATAACCTTTCAGATTTCCAAACTGAATACGAAATTGCTAAATTTTATGTGATTAAATCTTTCAATGAAGATGACGTTCATAAGAGTGTTAAATATAATGTTTGGACAAGTACTCCAAATGGAAATAAGAAGTTGAACGCCGCATTCCTTGATGCAGAAGCTAAATTGAGACAGACAGGGACTAAGTGTCCAGTTTTCCTCTTCTTCTCGGTTAATGCTAGCAGACAGTTTGTTGGAGTGGCTGAGATGCTTGGACCGGTGGACTTTAAAAACGACATGAACTTTTGGAAACTTGATAAGTACAACGGTTTCTTCCCAATTAAGTGGCACATAATAAAAGATGTTCCCAACAATCAGTTTGTGCATATCATCCTTCCAAGCAATGAGAACAAGCCTGTAACTTACACTAGGGACACACAAGAGATTGGATTGAAGGAGGGCCTGGAGATGCTGAATATTTTTAGAAGTTATACAGCTAAGACATCTCTATTGGATGATTTTGACTTCTATGAGAGGCGAGAAAAGTTATTTCGTTCCCAGAGGAGTACTAAGCACAAGCATGCAAGGCCGGAACAGGAAGTATATGGCAATGACAATTATCAAAACACTGTCAAAGCCAGAGAGAAGAAAATGGAGATGCAATCGAGTGGTACCAAGCAAGGTACTCTCATCAAACATACCAAAAACCTTTCTCTCAACAACTCTGGATTTAGATAG

Predicted protein sequences of Glyma16g00490

Limit To All Plant Sequences

>Glyma16g00490.1   sequence type=predicted peptide   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRHDQFQKPQSLSKGTTDHSQHQNKEDVVSIKDCISPDLTSFATSSGDVAAGFTGVHESEALSCYSSVSTSVGVQSKTVKGSVIAKNNPKSSGLMKPNKLKSTHRNGILTSTISETVADTGKDIKILNKAPHLRSNFPAATAPNTYHQIGKFSSLANPTCHVSPPTNHRPNTSTNYRPTGRVSNVNDRVLLGDNKFRSGQSEMSMEMTRGPRGHYNNFLLQPSLVKDALAITICRDEYNLSDFQTEYEIAKFYVIKSFNEDDVHKSVKYNVWTSTPNGNKKLNAAFLDAEAKLRQTGTKCPVFLFFSVNASRQFVGVAEMLGPVDFKNDMNFWKLDKYNGFFPIKWHIIKDVPNNQFVHIILPSNENKPVTYTRDTQEIGLKEGLEMLNIFRSYTAKTSLLDDFDFYERREKLFRSQRSTKHKHARPEQEVYGNDNYQNTVKAREKKMEMQSSGTKQGTLIKHTKNLSLNNSGFR*

>Glyma16g00490.2   sequence type=predicted peptide   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPNKLKSTHRNGILTSTISETVADTGKDIKILNKAPHLRSNFPAATAPNTYHQIGKFSSLANPTCHVSPPTNHRPNTSTNYRPTGRVSNVNDRVLLGDNKFRSGQSEMSMEMTRGPRGHYNNFLLQPSLVKDALAITICRDEYNLSDFQTEYEIAKFYVIKSFNEDDVHKSVKYNVWTSTPNGNKKLNAAFLDAEAKLRQTGTKCPVFLFFSVNASRQFVGVAEMLGPVDFKNDMNFWKLDKYNGFFPIKWHIIKDVPNNQFVHIILPSNENKPVTYTRDTQEIGLKEGLEMLNIFRSYTAKTSLLDDFDFYERREKLFRSQRSTKHKHARPEQEVYGNDNYQNTVKAREKKMEMQSSGTKQGTLIKHTKNLSLNNSGFR*

>Glyma16g00490.3   sequence type=predicted peptide   gene model=Glyma16g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLVSQAPHLRSNFPAATAPNTYHQIGKFSSLANPTCHVSPPTNHRPNTSTNYRPTGRVSNVNDRVLLGDNKFRSGQSEMSMEMTRGPRGHYNNFLLQPSLVKDALAITICRDEYNLSDFQTEYEIAKFYVIKSFNEDDVHKSVKYNVWTSTPNGNKKLNAAFLDAEAKLRQTGTKCPVFLFFSVNASRQFVGVAEMLGPVDFKNDMNFWKLDKYNGFFPIKWHIIKDVPNNQFVHIILPSNENKPVTYTRDTQEIGLKEGLEMLNIFRSYTAKTSLLDDFDFYERREKLFRSQRSTKHKHARPEQEVYGNDNYQNTVKAREKKMEMQSSGTKQGTLIKHTKNLSLNNSGFR*

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