|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G49910 | AT | Annotation by Michelle Graham. TAIR10: chloroplast heat shock protein 70-2 | chr5:20303470-20306295 FORWARD LENGTH=718 | SoyBase | E_val: 0 | ISS |
GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009532 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
KOG0102 | KOG | Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily | JGI | ISS | |
PTHR19375 | Panther | HEAT SHOCK PROTEIN 70KDA | JGI | ISS | |
PTHR19375:SF130 | Panther | JGI | ISS | ||
PF00012 | PFAM | Hsp70 protein | JGI | ISS | |
UniRef100_I1MJU7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJU7_SOYBN | SoyBase | E_val: 0 | ISS |
UniRef100_Q1SKX2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone DnaK n=1 Tax=Medicago truncatula RepID=Q1SKX2_MEDTR | SoyBase | E_val: 0 | ISS |
Glyma16g00410 not represented in the dataset |
Glyma16g00410 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.16g002500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g00410.1 sequence type=CDS gene model=Glyma16g00410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTGCTCAAGCGCCCAAATACACGGCCTCGGAACCCCTTCCTTTTCCCGAACCCTATTTTTAGGTCAGAGGCTAAATACCAAGGCCGCCTTTATCAAGGTCAAGTCCGCACCCACTCCCAGGAGGCTCCGCCCTCTCAGAGTCGTTAATGAGAAAGTCGTCGGTATCGATTTGGGAACCACCAACTCCGCCGTGGCCGCCATGGAAGGCGGTAAGCCCACCATCATCACCAACGCCGAGGGCCAGAGAACCACTCCCTCCGTCGTGGCCTACACCAAGAACGGCGACAGGCTCGTGGGCCAAATCGCCAAGCGTCAGGCCGTCGTCAACCCCGAGAACACTTTCTTCTCCGTCAAGAGGTTCATCGGCCGCAAGATGTCTGAGGTCGACGAAGAGTCCAAGCAGGTCTCTTACAGAGTCATCCGAGACGACAACGGCAACGTCAAACTCGACTGCCCCGCCATTGGCAAACAGTTCGCTGCTGAGGAAATTTCTGCCCAGGTTCTTAGGAAGCTTGTGGATGATGCTTCCAAGTTTTTGAACGATAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTCAATGACTCCCAAAGGACTGCCACCAAGGATGCCGGTCGGATTGCTGGTCTTGAGGTTCTTCGTATTATCAATGAACCAACCGCTGCATCCTTGGCCTATGGCTTTGAAAAGAAAAACAATGAAACAATCCTTGTTTTTGACCTTGGAGGCGGCACCTTTGATGTCTCTGTGCTCGAGGTTGGTGATGGAGTGTTTGAGGTCCTCTCTACTTCTGGTGACACCCACTTGGGTGGTGATGACTTTGATAAGAGAATTGTTGATTGGCTGGCTTCCAACTTCAAGAGAGATGAAGGCATAGACCTTTTGAAAGACAAACAAGCTCTTCAGCGTCTCACTGAGACAGCCGAGAAAGCAAAGATGGAGCTCTCAACATTGACTCAAACTAACATCAGTTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAGGCTCAGGACACCCGTTGAAAACTCATTGAGGGATGCAAAACTCTCGTTTAAGGATCTTGACGAAGTCATCCTTGTTGGTGGATCAACACGTATCCCAGCTGTTCAGGAGCTTGTAAAGAAGTTGACTGGCAAGGACCCAAATGTCACTGTCAATCCAGATGAAGTGGTTGCCCTTGGAGCTGCTGTTCAGGCTGGTGTCTTGGCTGGAGATGTCAGCGACATTGTGCTGTTGGATGTCACTCCATTATCTTTGGGTCTGGAAACTCTAGGTGGTGTGATGACAAAAATTATCCCCAGAAACACTACCCTTCCCACCTCAAAGTCTGAGGTTTTCTCAACTGCTGCTGATGGACAGACCAGTGTAGAGATCAACGTCCTTCAGGGTGAGAGAGAATTTGTTAGGGACAATAAATCACTTGGTAGCTTCCGCCTGGACGGTATCCCTCCTGCACCTCGTGGTGTTCCCCAGATTGAGGTGAAATTTGACATTGATGCCAATGGCATTCTCTCCGTCGCTGCTATTGACAAAGGCACAGGGAAGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAGGTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCAAAGGAAGACAAAGAAAAGAGGGATGCCATTGACACAAAGAACCAGGCAGATTCTGTGGTGTACCAGACAGAAAAGCAATTGAAAGAGCTTGGAGATAAGGTTCCTGGCCCTGTAAAAGAGAAGGTTGAAGCAAAACTAGGGGAGCTTAAAGATGCAATTTCTGGGGGTTCAACCCAAGCTATTAAGGATGCCATGGCTGCACTGAACCAGGAAGTCATGCAGCTTGGTCAGTCCCTTTACAACCAGCCGGGAGCTGCAGGTGCAGGAGGGCCAACACCACCTGGTGCCGACTCTGGCCCCTCAGAATCCTCAGGTAAGGGACCCGACGGAGATGTCATCGATGCAGATTTCACCGACTCTAAATGA
>Glyma16g00410.1 sequence type=predicted peptide gene model=Glyma16g00410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACSSAQIHGLGTPSFSRTLFLGQRLNTKAAFIKVKSAPTPRRLRPLRVVNEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSTLTQTNISLPFITATADGPKHIETTITRAKFEELCSDLLDRLRTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAIDKGTGKKQDITITGASTLPSDEVERMVNEAEKFSKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVEAKLGELKDAISGGSTQAIKDAMAALNQEVMQLGQSLYNQPGAAGAGGPTPPGADSGPSESSGKGPDGDVIDADFTDSK*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||