Glyma16g00340 - SoyBase

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Report for Sequence Feature Glyma16g00340

Feature Type:	gene_model
Chromosome:	Gm16
Start:	97034
stop:	99255
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g00340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11730	AT	Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein \| chr3:3709490-3711397 REVERSE LENGTH=205	SoyBase	E_val: 5.00E-123	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0000139	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0032588	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0030742	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP-dependent protein binding	SoyBase	N/A	ISS
GO:0080115	GO-mf	Annotation by Michelle Graham. GO Molecular Function: myosin XI tail binding	SoyBase	N/A	ISS
KOG0071	KOG	GTP-binding ADP-ribosylation factor Arf6 (dArf3)	JGI		ISS
KOG0084	KOG	GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF227	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_C6SXX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXX4_SOYBN	SoyBase	E_val: 4.00E-145	ISS
UniRef100_Q43462	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rab7p protein n=1 Tax=Glycine max RepID=Q43462_SOYBN	SoyBase	E_val: 2.00E-143	ISS

Expression Patterns of Glyma16g00340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g00340 not represented in the dataset	Glyma16g00340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g00340

Paralog	Evidence	Comments
Glyma12g28655	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g00340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g001700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g00340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g00340

Limit To All Plant Sequences

>Glyma16g00340.2   sequence type=transcript   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAATGAATGATTTTAATTGAGCGGCGGGGCAGAGGAAGGGGCAGAGTTTTGGAGTTTGAAAGAGAAAATATTGATTGCAGTTGAGTTCTAATGAGTAACGAATACGATTACCTGTTCAAGCTTCTCCTAATCGGAGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTATGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACGGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTATTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAACAGTGGTTGAATGAGATTGACAGATATGCAAATGACTCTGTATGCAAGCTTCTTGTGGGGAATAAATCTGATCTCGTTGATAACAAGGTTGTAGACTCATTAACTGCCAAGGCATTTGCGGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCCATCAATGTGGAGCAGGCTTTCTTGACTATGACAGCTGAGATTAAGAAGAAGTATCTAATTCTAGTTTCCCCTGTTCTCATTTAGAATCATTATTTAATCACAACTATTAATCAGTGTCACAAAATTTCTTTTTCCATATCGAGTTTTTCAGCA

>Glyma16g00340.3   sequence type=transcript   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAATGAATGATTTTAATTGAGCGGCGGGGCAGAGGAAGGGGCAGAGTTTTGGAGTTTGAAAGAGAAAATATTGATTGCAGTTGAGTTCTAATGAGTAACGAATACGATTACCTGTTCAAGCTTCTCCTAATCGGAGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTATGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACGGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTATTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAACAGTGGTTGAATGAGATTGACAGATATGCAAATGACTCTGTATGCAAGCTTCTTGTGGGGAATAAATCTGATCTCGTTGATAACAAGGTTGTAGACTCATTAACTGCCAAGCCAAACAACTGCTGGTAAGTCGGCAGAAACTGTTCAAATGAAGGGGCAACCGATCCCACAGAAGAGCAACTGCTGTGGTTAGGTTCTAGTTCTACGTTCTGTTATAGGGAGACTCTTTCCTGACTCTGTTATGATATATGGATGTTTAAGTAAATGTTAAAATATCACCTATCATCTATTTAAATCCTTGGATTATATTGTTCTGAATCTTATGATGATTTCCCATGTTTAAAATGAAAGGGATGCAATTTCTCACATGTCT

>Glyma16g00340.4   sequence type=transcript   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAATGAATGATTTTAATTGAGCGGCGGGGCAGAGGAAGGGGCAGAGTTTTGGAGTTTGAAAGAGAAAATATTGATTGCAGTTGAGTTCTAATGAGTAACGAATACGATTACCTGTTCAAGCTTCTCCTAATCGGAGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGTGAGTCATCACTTCCCTTCACTTTCATCTCTCTTGTTCTTGTTCTTCACCTCCTTTGTTTCTTCATTTCGTTTCAGGATGACTCCTATGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCGTAATTATCACTCTTCTTCTTCTTTTGCTATTTCTATTTATGGCCCAACAGTCAACACTGATTATTTTTATTTTTCTTCAGAAAATCAGAACGGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTATTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAACAGTGGTTGAATGAGATTGACAGATATGCAAATGACTCTGTATGCAAGCTTCTTGTGGGGAATAAATCTGATCTCGTTGATAACAAGGTTGTAGACTCATTAACTGCCAAGGCATTTGCGGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCCATCAATGTGGAGCAGGCTTTCTTGACTATGACAGCTGAGATTAAGAAGAAGATGGGAAGCCAAACAACTGCTGGTAAGTCGGCAGAAACTGTTCAAATGAAGGGGCAACCGATCCCACAGAAGAGCAACTGCTGTGGTTAGGTTCTAGTTCTACGTTCTGTTATAGGGAGACTCTTTCCTGACTCTGTTATGATATATGGATGTTTAAGTAAATGTTAAAATATCACCTATCATCTATTTAAATCCTTGGATTATATTGTTCTGAATCTTATGATGATTTCCCATGTTTAAAATGAAAGGGATGCAATTTCTCACATGTCT

Coding sequences of Glyma16g00340

Limit To All Plant Sequences

>Glyma16g00340.1   sequence type=CDS   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAACGAATACGATTACCTGTTCAAGCTTCTCCTAATCGGAGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTATGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACGGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTATTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAACAGTGGTTGAATGAGATTGACAGATATGCAAATGACTCTGTATGCAAGCTTCTTGTGGGGAATAAATCTGATCTCGTTGATAACAAGGTTGTAGACTCATTAACTGCCAAGGCATTTGCGGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCCATCAATGTGGAGCAGGCTTTCTTGACTATGACAGCTGAGATTAAGAAGAAGATGGGAAGCCAAACAACTGCTGGTAAGTCGGCAGAAACTGTTCAAATGAAGGGGCAACCGATCCCACAGAAGAGCAACTGCTGTGGTTAG

>Glyma16g00340.2   sequence type=CDS   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAACGAATACGATTACCTGTTCAAGCTTCTCCTAATCGGAGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTATGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACGGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTATTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAACAGTGGTTGAATGAGATTGACAGATATGCAAATGACTCTGTATGCAAGCTTCTTGTGGGGAATAAATCTGATCTCGTTGATAACAAGGTTGTAGACTCATTAACTGCCAAGGCATTTGCGGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCCATCAATGTGGAGCAGGCTTTCTTGACTATGACAGCTGAGATTAAGAAGAAGTATCTAATTCTAGTTTCCCCTGTTCTCATTTAG

>Glyma16g00340.3   sequence type=CDS   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAACGAATACGATTACCTGTTCAAGCTTCTCCTAATCGGAGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTATGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACGGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTATTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAACAGTGGTTGAATGAGATTGACAGATATGCAAATGACTCTGTATGCAAGCTTCTTGTGGGGAATAAATCTGATCTCGTTGATAACAAGGTTGTAGACTCATTAACTGCCAAGCCAAACAACTGCTGGTAA

>Glyma16g00340.4   sequence type=CDS   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCAACAGTCAACACTGATTATTTTTATTTTTCTTCAGAAAATCAGAACGGTGGAGCTGGAAGGGAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTATTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAACAGTGGTTGAATGAGATTGACAGATATGCAAATGACTCTGTATGCAAGCTTCTTGTGGGGAATAAATCTGATCTCGTTGATAACAAGGTTGTAGACTCATTAACTGCCAAGGCATTTGCGGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCCATCAATGTGGAGCAGGCTTTCTTGACTATGACAGCTGAGATTAAGAAGAAGATGGGAAGCCAAACAACTGCTGGTAAGTCGGCAGAAACTGTTCAAATGAAGGGGCAACCGATCCCACAGAAGAGCAACTGCTGTGGTTAG

Predicted protein sequences of Glyma16g00340

Limit To All Plant Sequences

>Glyma16g00340.1   sequence type=predicted peptide   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMTAEIKKKMGSQTTAGKSAETVQMKGQPIPQKSNCCG*

>Glyma16g00340.2   sequence type=predicted peptide   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMTAEIKKKYLILVSPVLI*

>Glyma16g00340.3   sequence type=predicted peptide   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVDNKVVDSLTAKPNNCW*

>Glyma16g00340.4   sequence type=predicted peptide   gene model=Glyma16g00340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQQSTLIIFIFLQKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMTAEIKKKMGSQTTAGKSAETVQMKGQPIPQKSNCCG*

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