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Report for Sequence Feature Glyma16g00310
Feature Type: gene_model
Chromosome: Gm16
Start: 83693
stop: 86505
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g00310
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G57680 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:21362749-21363837 REVER
SoyBase E_val: 5.00E-115 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1MJT4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MJT4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q7X8Q0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: P0041A24.7 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7X8Q0_ORYSJ
SoyBase E_val: 5.00E-66 ISS
Expression Patterns of Glyma16g00310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma16g00310
Paralog Evidence Comments
Glyma12g28640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g00310 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g001300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g00310
Transcripts of Glyma16g00310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g00310.4 sequence type=transcript gene model=Glyma16g00310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCGGAGGACACAGCTGGAGACAGGCTGTCACCAACAAAGTCCCACTCACCAATTCCTTCCCTTGGCCTTCCATCCTTCCTTCTTTCTCTCTCTCCTTCTCTTCTCCCAATCAAATCAATTACTATTAGGGTTAGCTGATCCCCTTCTTCCCCCCACCGCATCGTCCTTCCTCTTCACTGGATCAATATTCCTCCCGCTTACTGGGAAGAAGGCACAACCACCTGAGGATTTCCTGTATCCATGCTGTCAGAGAGCATGCGTGGAATCTGTACATCGGGTAATGCCCCTGTCGAGATTTGCTGCCGAGGCATTCGGTGTGGTGACGATTTGTTTAGTAGCCATCTTGGTTCTTCTTGGGTTGATGTGCATTGCTTACTCATTTTACTTCCGCTCTCGTATTCATAGTCAAGGTTTGGTTCAGCTCAAGTATTTTAGTGGTCCTTGGATCATCAGAATCACATTCATCCTATTTTCAATCTGGTGGGGCATTGGTGAAATTATTCGATTAACTTTGTTAAGGAGTACCTTTCACTTAAAATGGCCGGACACTGTCTGCAAATGCTATATTGTATCAAATATGGGATTTGCAGAACCGTGCCTCTTCCTCACACTTGTATTTCTCCTTCGTGCACCTTTACAGAATTTGGAGACTGGAATTATGAGCAGAAAATGGAATGTGAAAACTTCGGGATATATTCTTCTTTACTGCCTTCCAATGTTTGTTCTTCAGCTTTTTGTTATTTTGGTTGGACCTCAGTTAGACAAGAATAAGGGTTTTGGAAAAATGTTGCCTCATTATTTTTCAAGTGCAGTGGTTGCCTCTGGGGAGAATGATACCACCCTCTGTACTTACCCTTTACTCAGCACTATTCTCCACGGCCTTTTTGCCATTATCCTGACTTCCTACCTTTTTTGGCTTGGTAGTCGGATTTTGAAATTAGTTATTAACAAGGGTTTGCAGAAGAGGGTTTACACATTGCTATTCTCAGTTTCATGTTTCCTTCCATTAAGGGTTCTTTTTCTTGGTTTATCTGTTTTGTCTGGACCTGAACATGTTATGTTTGAAGCCTTAGTTTTCTTGGCTTTTCTTGCACTAGTATGTTGTGTTGGCTTGTGCATGTGCACACTTGTTTACCGTCCAGTTGCAGATTGCTTAGCGCTGGGAAATCTACAAGACTTAGAAGCCAGGAGGCTTAATGATGATCATAATGATACTGTGTCTCTTATTGCTAATCAGAGTTATCTGGAAGATAATGTTGAAGATAATGCTCGGTCTAGTCCTGGTAGATATTCTGATGCATCGACAAAGCGTGGATCAATTTCATTTCGGACATTGGAAAAGGGGGTTACATCAACTGGAACATTTGTAGAACTAAGCCTCTTCTCTCCCAGCCGCAGTGCAACCCCTCCAGGATCGCCTCCTCTTCTAGGTTGGCCTATGCGATCCCCAACACAAGTTATTGGACCATAGAGGCAGGCAGGGAACGGAATATGTTGGGTGAATATCAATTTTGTGGAAAAGGGAAAACTGATTGTAAAGGATTTAGCTTCAATAAGGCGTCTTTTTTTTTTTTTTTTTTAATTTTTGTTATGTTTGCTAATTCTAGGTATAATGTTTTTGCCCTGGAATTTATTGTGAGTACCTTTTTACATTTCTGTACCATCTCGACGACGTTTTACCTGTTTCTAATTTGTACTTGAAATGTTGGAATAGTCTTACTTGAAGTCGTTGGGTTACGATTAAGGTTATGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTGTATTCCTAACTCAATTTGGAGAGAAAAAATAATTTCGTAACATATTTGGTGATTTTTAACAATGTATGTTTACGCATTAAGATTTTGTTTAGAAATTCAGTTTTGTAGAAGCAGCTCTTGGGTTGTTTTTGTAAATTTAAGTTGATTTTTTTTATTCAAATTTGCACTTAATGC
Coding sequences of Glyma16g00310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g00310.3 sequence type=CDS gene model=Glyma16g00310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCCCTGTCGAGATTTGCTGCCGAGGCATTCGGTGTGGTGACGATTTGTTTAGTAGCCATCTTGGTTCTTCTTGGGTTGATGTGCATTGCTTACTCATTTTACTTCCGCTCTCGTATTCATAGTCAAGGTTTGGTTCAGCTCAAGTATTTTAGTGGTCCTTGGATCATCAGAATCACATTCATCCTATTTTCAATCTGGTGGGGCATTGGTGAAATTATTCGATTAACTTTGTTAAGGAGTACCTTTCACTTAAAATGGCCGGACACTGTCTGCAAATGCTATATTGTATCAAATATGGGATTTGCAGAACCGTGCCTCTTCCTCACACTTGTATTTCTCCTTCGTGCACCTTTACAGAATTTGGAGACTGGAATTATGAGCAGAAAATGGAATGTGAAAACTTCGGGATATATTCTTCTTTACTGCCTTCCAATGTTTGTTCTTCAGCTTTTTGTTATTTTGGTTGGACCTCAGTTAGACAAGAATAAGGGTTTTGGAAAAATGTTGCCTCATTATTTTTCAAGTGCAGTGGTTGCCTCTGGGGAGAATGATACCACCCTCTGTACTTACCCTTTACTCAGCACTATTCTCCACGGCCTTTTTGCCATTATCCTGACTTCCTACCTTTTTTGGCTTGGTAGTCGGATTTTGAAATTAGTTATTAACAAGGGTTTGCAGAAGAGGGTTTACACATTGCTATTCTCAGTTTCATGTTTCCTTCCATTAAGGGTTCTTTTTCTTGGTTTATCTGTTTTGTCTGGACCTGAACATGTTATGTTTGAAGCCTTAGTTTTCTTGGCTTTTCTTGCACTAGTATGTTGTGTTGGCTTGTGCATGTGCACACTTGTTTACCGTCCAGTTGCAGATTGCTTAGCGCTGGGAAATCTACAAGACTTAGAAGCCAGGAGGCTTAATGATGATCATAATGATACTGTGTCTCTTATTGCTAATCAGAGTTATCTGGAAGATAATGTTGAAGATAATGCTCGGTCTAGTCCTGGTAGATATTCTGATGCATCGACAAAGCGTGGATCAATTTCATTTCGGACATTGGAAAAGGGGGTTACATCAACTGGAACATTTGTAGAACTAAGCCTCTTCTCTCCCAGCCGCAGTGCAACCCCTCCAGGATCGCCTCCTCTTCTAGGTTGGCCTATGCGATCCCCAACACAAGTTATTGGACCATAG
>Glyma16g00310.4 sequence type=CDS gene model=Glyma16g00310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCCCTGTCGAGATTTGCTGCCGAGGCATTCGGTGTGGTGACGATTTGTTTAGTAGCCATCTTGGTTCTTCTTGGGTTGATGTGCATTGCTTACTCATTTTACTTCCGCTCTCGTATTCATAGTCAAGGTTTGGTTCAGCTCAAGTATTTTAGTGGTCCTTGGATCATCAGAATCACATTCATCCTATTTTCAATCTGGTGGGGCATTGGTGAAATTATTCGATTAACTTTGTTAAGGAGTACCTTTCACTTAAAATGGCCGGACACTGTCTGCAAATGCTATATTGTATCAAATATGGGATTTGCAGAACCGTGCCTCTTCCTCACACTTGTATTTCTCCTTCGTGCACCTTTACAGAATTTGGAGACTGGAATTATGAGCAGAAAATGGAATGTGAAAACTTCGGGATATATTCTTCTTTACTGCCTTCCAATGTTTGTTCTTCAGCTTTTTGTTATTTTGGTTGGACCTCAGTTAGACAAGAATAAGGGTTTTGGAAAAATGTTGCCTCATTATTTTTCAAGTGCAGTGGTTGCCTCTGGGGAGAATGATACCACCCTCTGTACTTACCCTTTACTCAGCACTATTCTCCACGGCCTTTTTGCCATTATCCTGACTTCCTACCTTTTTTGGCTTGGTAGTCGGATTTTGAAATTAGTTATTAACAAGGGTTTGCAGAAGAGGGTTTACACATTGCTATTCTCAGTTTCATGTTTCCTTCCATTAAGGGTTCTTTTTCTTGGTTTATCTGTTTTGTCTGGACCTGAACATGTTATGTTTGAAGCCTTAGTTTTCTTGGCTTTTCTTGCACTAGTATGTTGTGTTGGCTTGTGCATGTGCACACTTGTTTACCGTCCAGTTGCAGATTGCTTAGCGCTGGGAAATCTACAAGACTTAGAAGCCAGGAGGCTTAATGATGATCATAATGATACTGTGTCTCTTATTGCTAATCAGAGTTATCTGGAAGATAATGTTGAAGATAATGCTCGGTCTAGTCCTGGTAGATATTCTGATGCATCGACAAAGCGTGGATCAATTTCATTTCGGACATTGGAAAAGGGGGTTACATCAACTGGAACATTTGTAGAACTAAGCCTCTTCTCTCCCAGCCGCAGTGCAACCCCTCCAGGATCGCCTCCTCTTCTAGGTTGGCCTATGCGATCCCCAACACAAGTTATTGGACCATAG
Predicted protein sequences of Glyma16g00310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g00310.3 sequence type=predicted peptide gene model=Glyma16g00310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPLSRFAAEAFGVVTICLVAILVLLGLMCIAYSFYFRSRIHSQGLVQLKYFSGPWIIRITFILFSIWWGIGEIIRLTLLRSTFHLKWPDTVCKCYIVSNMGFAEPCLFLTLVFLLRAPLQNLETGIMSRKWNVKTSGYILLYCLPMFVLQLFVILVGPQLDKNKGFGKMLPHYFSSAVVASGENDTTLCTYPLLSTILHGLFAIILTSYLFWLGSRILKLVINKGLQKRVYTLLFSVSCFLPLRVLFLGLSVLSGPEHVMFEALVFLAFLALVCCVGLCMCTLVYRPVADCLALGNLQDLEARRLNDDHNDTVSLIANQSYLEDNVEDNARSSPGRYSDASTKRGSISFRTLEKGVTSTGTFVELSLFSPSRSATPPGSPPLLGWPMRSPTQVIGP*
>Glyma16g00310.4 sequence type=predicted peptide gene model=Glyma16g00310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPLSRFAAEAFGVVTICLVAILVLLGLMCIAYSFYFRSRIHSQGLVQLKYFSGPWIIRITFILFSIWWGIGEIIRLTLLRSTFHLKWPDTVCKCYIVSNMGFAEPCLFLTLVFLLRAPLQNLETGIMSRKWNVKTSGYILLYCLPMFVLQLFVILVGPQLDKNKGFGKMLPHYFSSAVVASGENDTTLCTYPLLSTILHGLFAIILTSYLFWLGSRILKLVINKGLQKRVYTLLFSVSCFLPLRVLFLGLSVLSGPEHVMFEALVFLAFLALVCCVGLCMCTLVYRPVADCLALGNLQDLEARRLNDDHNDTVSLIANQSYLEDNVEDNARSSPGRYSDASTKRGSISFRTLEKGVTSTGTFVELSLFSPSRSATPPGSPPLLGWPMRSPTQVIGP*