SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09000 | AT | Annotation by Michelle Graham. TAIR10: NPK1-related protein kinase 1 | chr1:2891111-2894987 FORWARD LENGTH=666 | SoyBase | E_val: 9.00E-68 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004709 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0198 | KOG | MEKK and related serine/threonine protein kinases | JGI | ISS | |
| PTHR24361 | Panther | MITOGEN-ACTIVATED KINASE KINASE KINASE | JGI | ISS | |
| PTHR24361:SF58 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7IL61 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase kinase n=2 Tax=Medicago truncatula RepID=G7IL61_MEDTR | SoyBase | E_val: 6.00E-129 | ISS |
| UniRef100_UPI0001BA87A8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001BA87A8 related cluster n=1 Tax=unknown RepID=UPI0001BA87A8 | SoyBase | E_val: 0 | ISS |
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Glyma16g00300 not represented in the dataset |
Glyma16g00300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g28630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g001200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g00300.2 sequence type=CDS gene model=Glyma16g00300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGCAATACGGCAACAACCCAGTGAATGGGTGAAAGGTAAACTTGTTGGTTGTGGATCTTTTGGCACTGTCCATTTGGCAATGAACAAATACACGGGTGGGCTTTTTGTTGTGAAATCACCACATTCCGGGGTTGGACGGCAGAGTTTGGACAAAGAGGTAAAAATCCTAAAAAGTTTAAATTCATCACCGTATATTGTCAAATGTTTGGGGACAGAGGAGGAGGAGCAAGGCAAACTGAATATTTTTATGGAGTACATGGCTGGGGGGAATCTGGCAGACATGGCGCACAAGTTTGGTGGGTCATTAGATGAAGAGGTGGTTCGGGTGTACACAAGGGAAATTCTTCATGGGTTAAAGCATCTCCACCAACATGGAATTGTGCATTGCGACCTAAAGTGCAAGAACGTGCTTTTGAGCTCATCTGGCAACATCAAGTTGGCAGATTTTGGAAGTGCAAAAAGGGTAAAGGAGGCAAATTGTTGGCAGTCTATTGGTGGGACTCCTCTCTGGATGGCTCCTGAAGTATTGAGGAACGAGTCTCTGGATTTTGCTGCGGATATATGGTCCTTGGGATGTACTGTTATTGAGATGGCTACTGGCACCCCTCCTTGGGCTCATCAGGTTTCAAATCCTACAACTGCTGTGCTCATGATTGCCCATGGTCATGGGATACCTCACTTTCCTCCCCATTTCTCTAAGGAGGGTTTGGATTTCTTGACCAGGTGCTTCGAGAGACATCCCAATAAGAGGCCTACTGTTCAGGACTTACTCACCCATCCATTTATTGTTTCTACAAAACAATATGCTTCTTCCCCGACAAGTGTCTTAGAGGTTCAAAATTTCAAAGATTCAGATGATGAATTAGAAACTTGTTCAGATCAGGGGAATCATTTCTCAATCACAAACACTACATTTGCATTTCATGATGATGACCTTAAAGGAATACCAATATGTAAACCCGAAGACATCTCATCAGGGAATTGGATTACTGTTAGATCAGGCTGA
>Glyma16g00300.2 sequence type=predicted peptide gene model=Glyma16g00300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGAIRQQPSEWVKGKLVGCGSFGTVHLAMNKYTGGLFVVKSPHSGVGRQSLDKEVKILKSLNSSPYIVKCLGTEEEEQGKLNIFMEYMAGGNLADMAHKFGGSLDEEVVRVYTREILHGLKHLHQHGIVHCDLKCKNVLLSSSGNIKLADFGSAKRVKEANCWQSIGGTPLWMAPEVLRNESLDFAADIWSLGCTVIEMATGTPPWAHQVSNPTTAVLMIAHGHGIPHFPPHFSKEGLDFLTRCFERHPNKRPTVQDLLTHPFIVSTKQYASSPTSVLEVQNFKDSDDELETCSDQGNHFSITNTTFAFHDDDLKGIPICKPEDISSGNWITVRSG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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