SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24270 | AT | Annotation by Michelle Graham. TAIR10: EMBRYO DEFECTIVE 140 | chr4:12581765-12587293 REVERSE LENGTH=816 | SoyBase | E_val: 0 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0128 | KOG | RNA-binding protein SART3 (RRM superfamily) | JGI | ISS | |
| PTHR23269 | Panther | RIBONUCLEOPROTEIN-RELATED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF05391 | PFAM | Lsm interaction motif | JGI | ISS | |
| UniRef100_B9SPA3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MJS7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJS7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g00240 not represented in the dataset |
Glyma16g00240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g28560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g000500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g00240.2 sequence type=transcript gene model=Glyma16g00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGATTGTTCGGTCTCATGGAGCGAAACAGCGTATTCGGCCGTGATAGATAAAGGCATGAAGCAAGAAGCAAGAAGCAAGAAGCAAGCACCCATCCACTGTAAGAATGGAGCAAAACCTAATGCTGGCCGCAGAAGCAGAGCGCGAAAAAAGCAAAGCCATGTCTGATTCCGACGAGAGGATGAAGGAAACCCTAGCCCTGACCGCAGAAGCAGAGCGTGACAGAGACAACTCCATGTCTGATTTCGACGACTCTGATTCTGAGGACGAAGCTCAGCAGAACCTCCAACTCGAATCTCTCCAGACCGAGCTTGTTACTAATCCCTCTAACTACGATGCTCATTTGCAATATATAACGCTTCTGAGGAGAATGGGTGATGTTGATAAACTGTCAAGAGCCAGGGAAGCTATGAGTGAACTCTTTCCGTTGAGCCCTGCAATATGGCGCCAATGGATCAAAGATGAGCTTTCTCTCAACACTGCTACTCGACCCGAGGCTTTCTCTAGAATTCTGAAGCTTTACGAACGAGGGGTGTTTGATTATCTGTCTGTCTCTCTATGGTGTGACTACATTAATTTTGTACAAGAGTTTGATCCAATGGTACGCCAATGTTCACCTACTGGTATTTCCAAGGCAAGGGATCTGTTTGAGAGTGCCCTTACTGCAGCCGGTCTGCATGTTGCTGAAGGCAGTAAAATATGGGAAGCATACAGGAAATATGAGCAGGCTATACTTCTAACCTTCGATGATATTGATGCACAGGCCAAAGAAAAGCAAGTTCAAAGCATTCGTAGTTTATTCCACCGCCAGTTGTCTGTTCCCCTTGCTGGTATGAGTTCAACAATTACTGCCTATAAGACTTGGGAGGTGGAACAAGGAAGTCTTCAAGATGTTGAATCCATTGACTTGGTTGATATTTATCCTCATGTTGCGGCTTCATACCAGAAGGCCTTGGATATGTATAATGCTCGTTTTCATCTTGAAGAACAGATTTTGAGCCCGAATGTTTCTGATTCAGAAAGATTACAACACTACATGAACTATTTGAAATTTGAGCAGTCTTCTGGAACGCCAGCCAGAATTCAAGTTCTATATGAACGAGCCATTACTGACTTTCCTATAACACCTGATCTTTGGCTGGATTATACTTGCAATTTGGACAACACTTTGAAGGTTGGTAATATTGTCAACAATGTTTATTCTAGGGCGACTAAGAACTGCCCTTGGGTTGGAGAACTTTGGGTTCGATGTATGCTTTCATTGGAGCGTGGTCATGCTTCTGAAAAAGACTTGTCTGAAATCTTTGAAAAGTCCCTTCAGTGTACCTTTTCAACTCTTGACGAGTATCTTGATTTGTTTCTTACCCGGGTAGATGGCTTAAGGCGAAGAATGGCATCCAGCAATGAAGAGGATTTGGAATATAAAATAATAAGGGAGACCTTTCAGCGTGCATCGGATTATCTGTCGCCATACTTGAAGAATACAGAGGGTTTGCTACATTTACATGCTTATTGGGCTCGTTTGGAAACAAAACTTGGGAAAGATATAACTGCAGCTCGTGGAGTTTGGGAGAATTGTCTGAAGATATGTGGTTCAATGTTGGAGTCATGGACTGGTTATATAGCAATGGAAGTGGAATTGGGTCACATAAATGAAGCAAGGTCCATATACAAGAGATGCTACAGTAAAAGATTTTCTGGAACTGGTTCAGAGGACATATGCCAATCATGGTTACGCTTTGAGAGGGAATTTGGCAAGTTGGAAGATTTTGATCATGCATTACACAAGGTTACCCCTCGGCTGGAAGAGCTAAAGTTATTTAGGATACAGCAGGAATCCAAGACAGCAGAGGAAAGTGAAAAGAATCCTAAGAGAAATGCTCGTGAAAAGAGAAAGCTGGGATCCGATATAACTGAAGAACAGTATCCAACAAAGAGATTTAGAGATGTTGGAAATCCAAAGAAAGCACCTGAGGAGAATAAATATCAACTGCAGAACACTTCTCAGGTGACAAAAGTGGAAGGGGCCAATTGGAAGAATACTAAAATTGATGATAACCCAAGTGAGCAACAGTTTAACCACGAAAAGAACAGGGCATACTCTGACCAGTGCACCGTTTTTATATCAAATCTTCATCCTACGGTAGATAGTTCTCTCAGCCTCTCTATTTCTGTGTGTTTCTGTGACTAATATGTTGTATTGTTGCAGGCAAATTATGAACATATTCGTAATTTCTTCGGCGATGATGGTGGAATTGTTGCCATCCGCATCCTACATGATAAATTCACTGGAAAATCAAGGGGACTAGCATATGTGGACTTTTTGGATGAAGAACACCTTGCTGCTGCAATAGCTAAGAACAGGCAAAAGTTAATTGGAAAGAAGCTAAGTATTGCTCGGTCTGACCCAAAGCGAGGTGGAAAGGAATCTTCTAATCCAAAAACATGGACAGAACATGCACGTGCCACTAATCATTCTAGTCAAAAAGGTTTCGTATCCAAAGAGACTGATGATACTCACAAGGGAGATGTAAAGGATGCGAAGTTCTCTTCTAGAAAGCCAGGAAATGATAACATCCAGCTTAAAGGGAAGAATACTTTTGCCGTGCCTAGAAATGTCAAACCACTTGGTTTTACTGCAAATAAACTAAAAGCAGAAGAGGGGGATGAAAAGCCAAAATCTAATGAAGAATTCAGAAAGATGTTCATTCGTTAAGGATTTTGTGCCCCTAATTTGTGACTCCGAAGATGGCAGTTATCTTTCAAATTTTAGGCAAAGGTGGAAATGACACAAGTTATTTTGTCTCCAGTATGGCTCTTTGTTCTGTCTGTTGCATTACTAATTAGATCAGTCTACCTAGATTAACCTTTCGGTAGTCTCTACTGTTTACAAATTACAATTGATTTACACAATATTTTTTGGTTGCGGCTGTATAGTGTCCGTACTTGAAATTTTCACAGTACAATTCTCTGATAGATGTTAGATATTTTACATTGTAATACAATTGGGCTATATTTTCCCCCAAGTTTATACCAGTCACTTGTGTGCACATAACAGGCAAATAAAGTGTATTATGCTGTGATGGGATATTAATTATATTCCGTTGATTAAAAAGTGGAGTGTGTT
>Glyma16g00240.1 sequence type=CDS gene model=Glyma16g00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAAAACCTAATGCTGGCCGCAGAAGCAGAGCGCGAAAAAAGCAAAGCCATGTCTGATTCCGACGAGAGGATGAAGGAAACCCTAGCCCTGACCGCAGAAGCAGAGCGTGACAGAGACAACTCCATGTCTGATTTCGACGACTCTGATTCTGAGGACGAAGCTCAGCAGAACCTCCAACTCGAATCTCTCCAGACCGAGCTTGTTACTAATCCCTCTAACTACGATGCTCATTTGCAATATATAACGCTTCTGAGGAGAATGGGTGATGTTGATAAACTGTCAAGAGCCAGGGAAGCTATGAGTGAACTCTTTCCGTTGAGCCCTGCAATATGGCGCCAATGGATCAAAGATGAGCTTTCTCTCAACACTGCTACTCGACCCGAGGCTTTCTCTAGAATTCTGAAGCTTTACGAACGAGGGGTGTTTGATTATCTGTCTGTCTCTCTATGGTGTGACTACATTAATTTTGTACAAGAGTTTGATCCAATGGTACGCCAATGTTCACCTACTGGTATTTCCAAGGCAAGGGATCTGTTTGAGAGTGCCCTTACTGCAGCCGGTCTGCATGTTGCTGAAGGCAGTAAAATATGGGAAGCATACAGGAAATATGAGCAGGCTATACTTCTAACCTTCGATGATATTGATGCACAGGCCAAAGAAAAGCAAGTTCAAAGCATTCGTAGTTTATTCCACCGCCAGTTGTCTGTTCCCCTTGCTGGTATGAGTTCAACAATTACTGCCTATAAGACTTGGGAGGTGGAACAAGGAAGTCTTCAAGATGTTGAATCCATTGACTTGGTTGATATTTATCCTCATGTTGCGGCTTCATACCAGAAGGCCTTGGATATGTATAATGCTCGTTTTCATCTTGAAGAACAGATTTTGAGCCCGAATGTTTCTGATTCAGAAAGATTACAACACTACATGAACTATTTGAAATTTGAGCAGTCTTCTGGAACGCCAGCCAGAATTCAAGTTCTATATGAACGAGCCATTACTGACTTTCCTATAACACCTGATCTTTGGCTGGATTATACTTGCAATTTGGACAACACTTTGAAGGTTGGTAATATTGTCAACAATGTTTATTCTAGGGCGACTAAGAACTGCCCTTGGGTTGGAGAACTTTGGGTTCGATGTATGCTTTCATTGGAGCGTGGTCATGCTTCTGAAAAAGACTTGTCTGAAATCTTTGAAAAGTCCCTTCAGTGTACCTTTTCAACTCTTGACGAGTATCTTGATTTGTTTCTTACCCGGGTAGATGGCTTAAGGCGAAGAATGGCATCCAGCAATGAAGAGGATTTGGAATATAAAATAATAAGGGAGACCTTTCAGCGTGCATCGGATTATCTGTCGCCATACTTGAAGAATACAGAGGGTTTGCTACATTTACATGCTTATTGGGCTCGTTTGGAAACAAAACTTGGGAAAGATATAACTGCAGCTCGTGGAGTTTGGGAGAATTGTCTGAAGATATGTGGTTCAATGTTGGAGTCATGGACTGGTTATATAGCAATGGAAGTGGAATTGGGTCACATAAATGAAGCAAGGTCCATATACAAGAGATGCTACAGTAAAAGATTTTCTGGAACTGGTTCAGAGGACATATGCCAATCATGGTTACGCTTTGAGAGGGAATTTGGCAAGTTGGAAGATTTTGATCATGCATTACACAAGGTTACCCCTCGGCTGGAAGAGCTAAAGTTATTTAGGATACAGCAGGAATCCAAGACAGCAGAGGAAAGTGAAAAGAATCCTAAGAGAAATGCTCGTGAAAAGAGAAAGCTGGGATCCGATATAACTGAAGAACAGTATCCAACAAAGAGATTTAGAGATGTTGGAAATCCAAAGAAAGCACCTGAGGAGAATAAATATCAACTGCAGAACACTTCTCAGGTGACAAAAGTGGAAGGGGCCAATTGGAAGAATACTAAAATTGATGATAACCCAAGTGAGCAACAGTTTAACCACGAAAAGAACAGGGCATACTCTGACCAGTGCACCGTTTTTATATCAAATCTTCATCCTACGGCAAATTATGAACATATTCGTAATTTCTTCGGCGATGATGGTGGAATTGTTGCCATCCGCATCCTACATGATAAATTCACTGGAAAATCAAGGGGACTAGCATATGTGGACTTTTTGGATGAAGAACACCTTGCTGCTGCAATAGCTAAGAACAGGCAAAAGTTAATTGGAAAGAAGCTAAGTATTGCTCGGTCTGACCCAAAGCGAGGTGGAAAGGAATCTTCTAATCCAAAAACATGGACAGAACATGCACGTGCCACTAATCATTCTAGTCAAAAAGGTTTCGTATCCAAAGAGACTGATGATACTCACAAGGGAGATGTAAAGGATGCGAAGTTCTCTTCTAGAAAGCCAGGAAATGATAACATCCAGCTTAAAGGGAAGAATACTTTTGCCGTGCCTAGAAATGTCAAACCACTTGGTTTTACTGCAAATAAACTAAAAGCAGAAGAGGGGGATGAAAAGCCAAAATCTAATGAAGAATTCAGAAAGATGTTCATTCGTTAA >Glyma16g00240.2 sequence type=CDS gene model=Glyma16g00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAAAACCTAATGCTGGCCGCAGAAGCAGAGCGCGAAAAAAGCAAAGCCATGTCTGATTCCGACGAGAGGATGAAGGAAACCCTAGCCCTGACCGCAGAAGCAGAGCGTGACAGAGACAACTCCATGTCTGATTTCGACGACTCTGATTCTGAGGACGAAGCTCAGCAGAACCTCCAACTCGAATCTCTCCAGACCGAGCTTGTTACTAATCCCTCTAACTACGATGCTCATTTGCAATATATAACGCTTCTGAGGAGAATGGGTGATGTTGATAAACTGTCAAGAGCCAGGGAAGCTATGAGTGAACTCTTTCCGTTGAGCCCTGCAATATGGCGCCAATGGATCAAAGATGAGCTTTCTCTCAACACTGCTACTCGACCCGAGGCTTTCTCTAGAATTCTGAAGCTTTACGAACGAGGGGTGTTTGATTATCTGTCTGTCTCTCTATGGTGTGACTACATTAATTTTGTACAAGAGTTTGATCCAATGGTACGCCAATGTTCACCTACTGGTATTTCCAAGGCAAGGGATCTGTTTGAGAGTGCCCTTACTGCAGCCGGTCTGCATGTTGCTGAAGGCAGTAAAATATGGGAAGCATACAGGAAATATGAGCAGGCTATACTTCTAACCTTCGATGATATTGATGCACAGGCCAAAGAAAAGCAAGTTCAAAGCATTCGTAGTTTATTCCACCGCCAGTTGTCTGTTCCCCTTGCTGGTATGAGTTCAACAATTACTGCCTATAAGACTTGGGAGGTGGAACAAGGAAGTCTTCAAGATGTTGAATCCATTGACTTGGTTGATATTTATCCTCATGTTGCGGCTTCATACCAGAAGGCCTTGGATATGTATAATGCTCGTTTTCATCTTGAAGAACAGATTTTGAGCCCGAATGTTTCTGATTCAGAAAGATTACAACACTACATGAACTATTTGAAATTTGAGCAGTCTTCTGGAACGCCAGCCAGAATTCAAGTTCTATATGAACGAGCCATTACTGACTTTCCTATAACACCTGATCTTTGGCTGGATTATACTTGCAATTTGGACAACACTTTGAAGGTTGGTAATATTGTCAACAATGTTTATTCTAGGGCGACTAAGAACTGCCCTTGGGTTGGAGAACTTTGGGTTCGATGTATGCTTTCATTGGAGCGTGGTCATGCTTCTGAAAAAGACTTGTCTGAAATCTTTGAAAAGTCCCTTCAGTGTACCTTTTCAACTCTTGACGAGTATCTTGATTTGTTTCTTACCCGGGTAGATGGCTTAAGGCGAAGAATGGCATCCAGCAATGAAGAGGATTTGGAATATAAAATAATAAGGGAGACCTTTCAGCGTGCATCGGATTATCTGTCGCCATACTTGAAGAATACAGAGGGTTTGCTACATTTACATGCTTATTGGGCTCGTTTGGAAACAAAACTTGGGAAAGATATAACTGCAGCTCGTGGAGTTTGGGAGAATTGTCTGAAGATATGTGGTTCAATGTTGGAGTCATGGACTGGTTATATAGCAATGGAAGTGGAATTGGGTCACATAAATGAAGCAAGGTCCATATACAAGAGATGCTACAGTAAAAGATTTTCTGGAACTGGTTCAGAGGACATATGCCAATCATGGTTACGCTTTGAGAGGGAATTTGGCAAGTTGGAAGATTTTGATCATGCATTACACAAGGTTACCCCTCGGCTGGAAGAGCTAAAGTTATTTAGGATACAGCAGGAATCCAAGACAGCAGAGGAAAGTGAAAAGAATCCTAAGAGAAATGCTCGTGAAAAGAGAAAGCTGGGATCCGATATAACTGAAGAACAGTATCCAACAAAGAGATTTAGAGATGTTGGAAATCCAAAGAAAGCACCTGAGGAGAATAAATATCAACTGCAGAACACTTCTCAGGTGACAAAAGTGGAAGGGGCCAATTGGAAGAATACTAAAATTGATGATAACCCAAGTGAGCAACAGTTTAACCACGAAAAGAACAGGGCATACTCTGACCAGTGCACCGTTTTTATATCAAATCTTCATCCTACGGTAGATAGTTCTCTCAGCCTCTCTATTTCTGTGTGTTTCTGTGACTAA
>Glyma16g00240.1 sequence type=predicted peptide gene model=Glyma16g00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQNLMLAAEAEREKSKAMSDSDERMKETLALTAEAERDRDNSMSDFDDSDSEDEAQQNLQLESLQTELVTNPSNYDAHLQYITLLRRMGDVDKLSRAREAMSELFPLSPAIWRQWIKDELSLNTATRPEAFSRILKLYERGVFDYLSVSLWCDYINFVQEFDPMVRQCSPTGISKARDLFESALTAAGLHVAEGSKIWEAYRKYEQAILLTFDDIDAQAKEKQVQSIRSLFHRQLSVPLAGMSSTITAYKTWEVEQGSLQDVESIDLVDIYPHVAASYQKALDMYNARFHLEEQILSPNVSDSERLQHYMNYLKFEQSSGTPARIQVLYERAITDFPITPDLWLDYTCNLDNTLKVGNIVNNVYSRATKNCPWVGELWVRCMLSLERGHASEKDLSEIFEKSLQCTFSTLDEYLDLFLTRVDGLRRRMASSNEEDLEYKIIRETFQRASDYLSPYLKNTEGLLHLHAYWARLETKLGKDITAARGVWENCLKICGSMLESWTGYIAMEVELGHINEARSIYKRCYSKRFSGTGSEDICQSWLRFEREFGKLEDFDHALHKVTPRLEELKLFRIQQESKTAEESEKNPKRNAREKRKLGSDITEEQYPTKRFRDVGNPKKAPEENKYQLQNTSQVTKVEGANWKNTKIDDNPSEQQFNHEKNRAYSDQCTVFISNLHPTANYEHIRNFFGDDGGIVAIRILHDKFTGKSRGLAYVDFLDEEHLAAAIAKNRQKLIGKKLSIARSDPKRGGKESSNPKTWTEHARATNHSSQKGFVSKETDDTHKGDVKDAKFSSRKPGNDNIQLKGKNTFAVPRNVKPLGFTANKLKAEEGDEKPKSNEEFRKMFIR* >Glyma16g00240.2 sequence type=predicted peptide gene model=Glyma16g00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQNLMLAAEAEREKSKAMSDSDERMKETLALTAEAERDRDNSMSDFDDSDSEDEAQQNLQLESLQTELVTNPSNYDAHLQYITLLRRMGDVDKLSRAREAMSELFPLSPAIWRQWIKDELSLNTATRPEAFSRILKLYERGVFDYLSVSLWCDYINFVQEFDPMVRQCSPTGISKARDLFESALTAAGLHVAEGSKIWEAYRKYEQAILLTFDDIDAQAKEKQVQSIRSLFHRQLSVPLAGMSSTITAYKTWEVEQGSLQDVESIDLVDIYPHVAASYQKALDMYNARFHLEEQILSPNVSDSERLQHYMNYLKFEQSSGTPARIQVLYERAITDFPITPDLWLDYTCNLDNTLKVGNIVNNVYSRATKNCPWVGELWVRCMLSLERGHASEKDLSEIFEKSLQCTFSTLDEYLDLFLTRVDGLRRRMASSNEEDLEYKIIRETFQRASDYLSPYLKNTEGLLHLHAYWARLETKLGKDITAARGVWENCLKICGSMLESWTGYIAMEVELGHINEARSIYKRCYSKRFSGTGSEDICQSWLRFEREFGKLEDFDHALHKVTPRLEELKLFRIQQESKTAEESEKNPKRNAREKRKLGSDITEEQYPTKRFRDVGNPKKAPEENKYQLQNTSQVTKVEGANWKNTKIDDNPSEQQFNHEKNRAYSDQCTVFISNLHPTVDSSLSLSISVCFCD*
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