SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13720 | AT | Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0114) | chr5:4427960-4429029 FORWARD LENGTH=262 | SoyBase | E_val: 2.00E-118 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| PF03350 | PFAM | Uncharacterized protein family, UPF0114 | JGI | ISS | |
| UniRef100_D7M5V7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Structural constituent of ribosome n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M5V7_ARALL | SoyBase | E_val: 8.00E-117 | ISS |
| UniRef100_UPI000233C158 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C158 related cluster n=1 Tax=unknown RepID=UPI000233C158 | SoyBase | E_val: 0 | ISS |
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Glyma15g43266 not represented in the dataset |
Glyma15g43266 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g276700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g43266.1 sequence type=CDS gene model=Glyma15g43266 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCTACTCCTTCTTCTCTCCCTCTCTTTTATACCCTCCCTCACATATTCCCCGTCGACTTTTTTGTCCCAAGGCTTCCTTAAGCTCTTCCTCCCCTGAATCCAAAGCATCGCAGAGTGTTTCTTCTGCAACTTCCACCACCACTTCCCCTACCCCTTCGGTTGAGTCTAGGCCACCTGACCCCGCCTTCAACTATGCACTCACCAACCCTAACGGCAACCCAATCGTAAGGATTGTTCGAGCCACCGAGTCTTCCATTGAAAGGGTCATTTTTGATTTCCGCTTCTTGGCATTACTTGCTGTTGGAGGGTCCTTGGCAGGGTCACTCTTGTGCTTTCTAAATGGTTGTATTTATATTATTGATGCATACAAAGTCTATTGGTCAAGCTGTGTCAAAGGAGTTCACACTGGACAAATGGTTCTGCGGTTGGTTGAAGCAATTGATGTTTATCTTGCTGGTACAGTTATGTTGATTTTTGGTATGGGCTTATATGGATTGTTCATAAGCAATGTACCTCCTGATGTTCCACCTACCGTAGACCGTGCCCTTAAAGGATCCTCTTTGTTTGGAATGTTTGCTATGAAGGAGAGGCCTAAATGGATGAAAATATGCTCGCTTGATGAATTGAAGACTAAGGTGGGACATGTTATTGTCATGATTCTCCTGGTAAAGATGTTTGAGAGGAGCAAAATGGTTACAATTGTCACGGGATTGGATTTACTATGTTATTCAATTTGTATTTTTTTATCATCCGCATCTTTGTATATCCTCCATAACCTACATAAGTCAGACTAG
>Glyma15g43266.1 sequence type=predicted peptide gene model=Glyma15g43266 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALYSFFSPSLLYPPSHIPRRLFCPKASLSSSSPESKASQSVSSATSTTTSPTPSVESRPPDPAFNYALTNPNGNPIVRIVRATESSIERVIFDFRFLALLAVGGSLAGSLLCFLNGCIYIIDAYKVYWSSCVKGVHTGQMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPDVPPTVDRALKGSSLFGMFAMKERPKWMKICSLDELKTKVGHVIVMILLVKMFERSKMVTIVTGLDLLCYSICIFLSSASLYILHNLHKSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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