Glyma15g43210 - SoyBase

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Report for Sequence Feature Glyma15g43210

Feature Type:	gene_model
Chromosome:	Gm15
Start:	50748753
stop:	50754087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g43210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12290	AT	Annotation by Michelle Graham. TAIR10: Copper amine oxidase family protein \| chr4:7304434-7306973 FORWARD LENGTH=741	SoyBase	E_val: 0	ISS
GO:0009308	GO-bp	Annotation by Michelle Graham. GO Biological Process: amine metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0048038	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quinone binding	SoyBase	N/A	ISS
KOG1186	KOG	Copper amine oxidase	JGI		ISS
PTHR10638	Panther	COPPER/TOPAQUINONE OXIDASE	JGI		ISS
PTHR10638:SF12	Panther	COPPER AMINE OXIDASE	JGI		ISS
PF01179	PFAM	Copper amine oxidase, enzyme domain	JGI		ISS
PF02727	PFAM	Copper amine oxidase, N2 domain	JGI		ISS
PF02728	PFAM	Copper amine oxidase, N3 domain	JGI		ISS
UniRef100_G7J7B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Primary amine oxidase n=1 Tax=Medicago truncatula RepID=G7J7B0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MJR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJR2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g43210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g43210

Paralog	Evidence	Comments
Glyma10g11680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g43210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g276400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g43210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g43210

Limit To All Plant Sequences

>Glyma15g43210.4   sequence type=transcript   gene model=Glyma15g43210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTTGGACCCTTCTGTGCAATAAGTTTATAACCTCAGGCAGTGCCTTATGTTCCATGGTGCAGCTAAAGAACGAGAAGAAAAATAGTCTTTTACTATATATATTCACGTGAAGCTTTCATCTCTGGTCTCAATACTATTCACACCTCTCTCTCACTCGTGATATCTATCCATGGAGGCCAAAAACTTGTGGCGCTTCCTTGTTCTTTCAATCGGTGTGGTACTAGTTTTACTTGTCACTCGGCTTCCCAACAAGGAGGCTCTAGACTGCAACCTTTACTCTGGATGGTGCACCTCAAAGAACCGCTTCTACTCTTCAGCACATCCTAATAACCCGATTAAGAAACCATCATCATTTTCCACATATCATCACAACCAACACCATGATGAATCTGAGATTCCTGAACACCCTCTTGACCCTCTAACCATCCAAGAGTTCAACAAGGTCCGCACCATCCTATCCAACCACCCCCTCTTCAAGTCCTCATCCACCTACACTCTCAACTCAGTTGTCCTTGAAGAGCCAGACAAAAAGCTAGTCCTCAAATGGAAAAAGGGTGATCCACCCTTGCCTAGGAAGGCTTCCGTGGTTGCATATGTGAAAGGAGACTCTCATGTGCTCACTGTGGACCTCGAAACCGGCCAGGTGGCGAGCCACAAAACCACCGGCTCAGTCTCGGGGTACCCCACCATGACCATGGAAGACATGGTGGGGGTACTAGAGGTTCCCCTCAAGAGCACTGAGTTCAACCGCTCGATCACTAAACGCGGTGTCAATTTAGCAGACCTGGCTTGCTTGCCAATCTCTTCAGGGTGGTATGGGACCCCAGTGGAGGAGAACAGAAGGTTGATTAAGGTGCAGTGCTATTCCAAAGAAGGCACTGTGAACTTCTACATGAAACCAATTGAGGGTGTCACTGCCTTGGTTGACATGGATAGAAAAGAGGTGCTTGCAATTTCAGATAATGGCCAAAACATCCCTGTGGCGAATGGAATTAACACTGACTACCGTTACTCCATTCAGAAGCTGAATGGAGAGTTGAGGCTACTGAATCCAATATCCTTGGAGCAACCAAAAGGTCCAAGCTTCACAATTGAAGGGCACTTGGTGAAATGGGCAAACTGGGAATTCCATCTGAGACCAGACCCAAGAGCTGGGACCATAATTTCTCAAGCCAAGGTGAGGGACCCTGACACATCAAAGCTGAGAAGTGTCATGTACAAAGGGTTCACCTCTGAGCTATTTGTGCCTTACATGGATCCCACAGAAGGGTGGTACTTTAAGACATACATGGATGCTGGTGAGTATGGATTTGGGTTGCAGGCAATGCCACTAGACCCCTTGAATGATTGCCCACGGAATGCTTACTACATGGATGGTGTGTTTGCCTCTTCTGATGGAACACCATATCTCCAACCCAACATGATTTGCATTTTTGAGAGTTATGCTGGTGACATTGCGTGGCGACATGCCGAGTGCCCCATCACTGACCTCAAGGTTACAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGGATGGCAGCAGCAGTAGCAAACTATGACTATATCGTGGATTGGGAATTTCAAACTGATGGGCTAATCAGAGCAAAGGTTGGACTGAGTGGTATCTTGATGGTGAAAGGAACTACCAATGAGAATATGGACCAAGTCCCTAACCAAGAATATCTTTATGGAACCCTTTTGAGTGAAAACATTATTGGTGTAATCCATGACCATTTTATCACATATTACCTAGATATGGACGTTGATGGCTCTGACAATTCATTTGTTAAGGTAAACATAAAGAAGCAAGAGACCTCTCGGGGAGAATCACCCAGAAAGAGTTATCTAAAAGCTGTTAAAAAAGTGGCAAAGACAGAGAAAGATGCTCAAATAAGACTTCAACTTTATGAGCCATCTGAATTCCATGTGGTGAACCCATTGAAGAAGACAAGGGTAGGGAACCCCGTTGGGTACAAATTGGTTCCCGGTGCCACAGCAGCTAGCCTGCTGGATCCAGAAGATCCACCACAGAAAAGAGCAGCTTTTACCAACAACCAATTATGGGTCACTCCTTACAACAAAAGTGAGCAATGGGCTGGTGGCTTATTTGTTTACCAGAGCAAAGGCGATGATACTCTTCAAGTCTGGTCCAACAGGGATCGTCCAATTGAGAATAAAGACATTGTGTTGTGGTACACAATAGGGTTCCATCATATACCCTGTCAAGAGGACTACCCTATCATGCCTACTGTATCATCAAGTTTTGATTTGAAACCTGCTAATTTCTTTGAGAGAAATCCAATCCTTGGAGTCCCTCCCAATTTCGAAGATGATTTACCTGTTTGCAAGGCTCGTGATTCAGCTTGAGATCCCATCAGTTGGTGTTTAGTCTAACTAGATGCATGCTTTATTTATACATGTAACAATTGATGCCCAAACTTAACTTTAAATAATTAGTATAAGGGTAGCTAAACCTAGATTATGATGTTAAAAATCTAGAATGTGACTTGAATCAATATAATATAAATAAATTTGTGAATTCAATCACAGGTTTGGATAACACAAAATTCACGGTAGCTTTCAAAGTTTGGAGTTCCCGGGTCAATTACATATGACCTAAATATGTTGTAGGTTTAGTTAGAGATTTTTTTTTTAATTTTTGGTTCATGTAAGTTTATTTTTCTAATTTTAGTTTTTTATAAGTTTTGCTTATTTAATTTTGGTCCATGCAAA

Coding sequences of Glyma15g43210

Limit To All Plant Sequences

>Glyma15g43210.3   sequence type=CDS   gene model=Glyma15g43210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCAAAAACTTGTGGCGCTTCCTTGTTCTTTCAATCGGTGTGGTACTAGTTTTACTTGTCACTCGGCTTCCCAACAAGGAGGCTCTAGACTGCAACCTTTACTCTGGATGGTGCACCTCAAAGAACCGCTTCTACTCTTCAGCACATCCTAATAACCCGATTAAGAAACCATCATCATTTTCCACATATCATCACAACCAACACCATGATGAATCTGAGATTCCTGAACACCCTCTTGACCCTCTAACCATCCAAGAGTTCAACAAGGTCCGCACCATCCTATCCAACCACCCCCTCTTCAAGTCCTCATCCACCTACACTCTCAACTCAGTTGTCCTTGAAGAGCCAGACAAAAAGCTAGTCCTCAAATGGAAAAAGGGTGATCCACCCTTGCCTAGGAAGGCTTCCGTGGTTGCATATGTGAAAGGAGACTCTCATGTGCTCACTGTGGACCTCGAAACCGGCCAGGTGGCGAGCCACAAAACCACCGGCTCAGTCTCGGGGTACCCCACCATGACCATGGAAGACATGGTGGGGGTACTAGAGGTTCCCCTCAAGAGCACTGAGTTCAACCGCTCGATCACTAAACGCGGTGTCAATTTAGCAGACCTGGCTTGCTTGCCAATCTCTTCAGGGTGGTATGGGACCCCAGTGGAGGAGAACAGAAGGTTGATTAAGGTGCAGTGCTATTCCAAAGAAGGCACTGTGAACTTCTACATGAAACCAATTGAGGGTGTCACTGCCTTGGTTGACATGGATAGAAAAGAGGTGCTTGCAATTTCAGATAATGGCCAAAACATCCCTGTGGCGAATGGAATTAACACTGACTACCGTTACTCCATTCAGAAGCTGAATGGAGAGTTGAGGCTACTGAATCCAATATCCTTGGAGCAACCAAAAGGTCCAAGCTTCACAATTGAAGGGCACTTGGTGAAATGGGCAAACTGGGAATTCCATCTGAGACCAGACCCAAGAGCTGGGACCATAATTTCTCAAGCCAAGGTGAGGGACCCTGACACATCAAAGCTGAGAAGTGTCATGTACAAAGGGTTCACCTCTGAGCTATTTGTGCCTTACATGGATCCCACAGAAGGGTGGTACTTTAAGACATACATGGATGCTGGTGAGTATGGATTTGGGTTGCAGGCAATGCCACTAGACCCCTTGAATGATTGCCCACGGAATGCTTACTACATGGATGGTGTGTTTGCCTCTTCTGATGGAACACCATATCTCCAACCCAACATGATTTGCATTTTTGAGAGTTATGCTGGTGACATTGCGTGGCGACATGCCGAGTGCCCCATCACTGACCTCAAGGTTACAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGGATGGCAGCAGCAGTAGCAAACTATGACTATATCGTGGATTGGGAATTTCAAACTGATGGGCTAATCAGAGCAAAGGTTGGACTGAGTGGTATCTTGATGGTGAAAGGAACTACCAATGAGAATATGGACCAAGTCCCTAACCAAGAATATCTTTATGGAACCCTTTTGAGTGAAAACATTATTGGTGTAATCCATGACCATTTTATCACATATTACCTAGATATGGACGTTGATGGCTCTGACAATTCATTTGTTAAGGTAAACATAAAGAAGCAAGAGACCTCTCGGGGAGAATCACCCAGAAAGAGTTATCTAAAAGCTGTTAAAAAAGTGGCAAAGACAGAGAAAGATGCTCAAATAAGACTTCAACTTTATGAGCCATCTGAATTCCATGTGGTGAACCCATTGAAGAAGACAAGGGTAGGGAACCCCGTTGGGTACAAATTGGTTCCCGGTGCCACAGCAGCTAGCCTGCTGGATCCAGAAGATCCACCACAGAAAAGAGCAGCTTTTACCAACAACCAATTATGGGTCACTCCTTACAACAAAAGTGAGCAATGGGCTGGTGGCTTATTTGTTTACCAGAGCAAAGGCGATGATACTCTTCAAGTCTGGTCCAACAGGGATCGTCCAATTGAGAATAAAGACATTGTGTTGTGGTACACAATAGGGTTCCATCATATACCCTGTCAAGAGGACTACCCTATCATGCCTACTGTATCATCAAGTTTTGATTTGAAACCTGCTAATTTCTTTGAGAGAAATCCAATCCTTGGAGTCCCTCCCAATTTCGAAGATGATTTACCTGTTTGCAAGGCTCGTGATTCAGCTTGA

>Glyma15g43210.4   sequence type=CDS   gene model=Glyma15g43210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCAAAAACTTGTGGCGCTTCCTTGTTCTTTCAATCGGTGTGGTACTAGTTTTACTTGTCACTCGGCTTCCCAACAAGGAGGCTCTAGACTGCAACCTTTACTCTGGATGGTGCACCTCAAAGAACCGCTTCTACTCTTCAGCACATCCTAATAACCCGATTAAGAAACCATCATCATTTTCCACATATCATCACAACCAACACCATGATGAATCTGAGATTCCTGAACACCCTCTTGACCCTCTAACCATCCAAGAGTTCAACAAGGTCCGCACCATCCTATCCAACCACCCCCTCTTCAAGTCCTCATCCACCTACACTCTCAACTCAGTTGTCCTTGAAGAGCCAGACAAAAAGCTAGTCCTCAAATGGAAAAAGGGTGATCCACCCTTGCCTAGGAAGGCTTCCGTGGTTGCATATGTGAAAGGAGACTCTCATGTGCTCACTGTGGACCTCGAAACCGGCCAGGTGGCGAGCCACAAAACCACCGGCTCAGTCTCGGGGTACCCCACCATGACCATGGAAGACATGGTGGGGGTACTAGAGGTTCCCCTCAAGAGCACTGAGTTCAACCGCTCGATCACTAAACGCGGTGTCAATTTAGCAGACCTGGCTTGCTTGCCAATCTCTTCAGGGTGGTATGGGACCCCAGTGGAGGAGAACAGAAGGTTGATTAAGGTGCAGTGCTATTCCAAAGAAGGCACTGTGAACTTCTACATGAAACCAATTGAGGGTGTCACTGCCTTGGTTGACATGGATAGAAAAGAGGTGCTTGCAATTTCAGATAATGGCCAAAACATCCCTGTGGCGAATGGAATTAACACTGACTACCGTTACTCCATTCAGAAGCTGAATGGAGAGTTGAGGCTACTGAATCCAATATCCTTGGAGCAACCAAAAGGTCCAAGCTTCACAATTGAAGGGCACTTGGTGAAATGGGCAAACTGGGAATTCCATCTGAGACCAGACCCAAGAGCTGGGACCATAATTTCTCAAGCCAAGGTGAGGGACCCTGACACATCAAAGCTGAGAAGTGTCATGTACAAAGGGTTCACCTCTGAGCTATTTGTGCCTTACATGGATCCCACAGAAGGGTGGTACTTTAAGACATACATGGATGCTGGTGAGTATGGATTTGGGTTGCAGGCAATGCCACTAGACCCCTTGAATGATTGCCCACGGAATGCTTACTACATGGATGGTGTGTTTGCCTCTTCTGATGGAACACCATATCTCCAACCCAACATGATTTGCATTTTTGAGAGTTATGCTGGTGACATTGCGTGGCGACATGCCGAGTGCCCCATCACTGACCTCAAGGTTACAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGGATGGCAGCAGCAGTAGCAAACTATGACTATATCGTGGATTGGGAATTTCAAACTGATGGGCTAATCAGAGCAAAGGTTGGACTGAGTGGTATCTTGATGGTGAAAGGAACTACCAATGAGAATATGGACCAAGTCCCTAACCAAGAATATCTTTATGGAACCCTTTTGAGTGAAAACATTATTGGTGTAATCCATGACCATTTTATCACATATTACCTAGATATGGACGTTGATGGCTCTGACAATTCATTTGTTAAGGTAAACATAAAGAAGCAAGAGACCTCTCGGGGAGAATCACCCAGAAAGAGTTATCTAAAAGCTGTTAAAAAAGTGGCAAAGACAGAGAAAGATGCTCAAATAAGACTTCAACTTTATGAGCCATCTGAATTCCATGTGGTGAACCCATTGAAGAAGACAAGGGTAGGGAACCCCGTTGGGTACAAATTGGTTCCCGGTGCCACAGCAGCTAGCCTGCTGGATCCAGAAGATCCACCACAGAAAAGAGCAGCTTTTACCAACAACCAATTATGGGTCACTCCTTACAACAAAAGTGAGCAATGGGCTGGTGGCTTATTTGTTTACCAGAGCAAAGGCGATGATACTCTTCAAGTCTGGTCCAACAGGGATCGTCCAATTGAGAATAAAGACATTGTGTTGTGGTACACAATAGGGTTCCATCATATACCCTGTCAAGAGGACTACCCTATCATGCCTACTGTATCATCAAGTTTTGATTTGAAACCTGCTAATTTCTTTGAGAGAAATCCAATCCTTGGAGTCCCTCCCAATTTCGAAGATGATTTACCTGTTTGCAAGGCTCGTGATTCAGCTTGA

Predicted protein sequences of Glyma15g43210

Limit To All Plant Sequences

>Glyma15g43210.3   sequence type=predicted peptide   gene model=Glyma15g43210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKNLWRFLVLSIGVVLVLLVTRLPNKEALDCNLYSGWCTSKNRFYSSAHPNNPIKKPSSFSTYHHNQHHDESEIPEHPLDPLTIQEFNKVRTILSNHPLFKSSSTYTLNSVVLEEPDKKLVLKWKKGDPPLPRKASVVAYVKGDSHVLTVDLETGQVASHKTTGSVSGYPTMTMEDMVGVLEVPLKSTEFNRSITKRGVNLADLACLPISSGWYGTPVEENRRLIKVQCYSKEGTVNFYMKPIEGVTALVDMDRKEVLAISDNGQNIPVANGINTDYRYSIQKLNGELRLLNPISLEQPKGPSFTIEGHLVKWANWEFHLRPDPRAGTIISQAKVRDPDTSKLRSVMYKGFTSELFVPYMDPTEGWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAYYMDGVFASSDGTPYLQPNMICIFESYAGDIAWRHAECPITDLKVTEVRPKVTLVVRMAAAVANYDYIVDWEFQTDGLIRAKVGLSGILMVKGTTNENMDQVPNQEYLYGTLLSENIIGVIHDHFITYYLDMDVDGSDNSFVKVNIKKQETSRGESPRKSYLKAVKKVAKTEKDAQIRLQLYEPSEFHVVNPLKKTRVGNPVGYKLVPGATAASLLDPEDPPQKRAAFTNNQLWVTPYNKSEQWAGGLFVYQSKGDDTLQVWSNRDRPIENKDIVLWYTIGFHHIPCQEDYPIMPTVSSSFDLKPANFFERNPILGVPPNFEDDLPVCKARDSA*

>Glyma15g43210.4   sequence type=predicted peptide   gene model=Glyma15g43210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKNLWRFLVLSIGVVLVLLVTRLPNKEALDCNLYSGWCTSKNRFYSSAHPNNPIKKPSSFSTYHHNQHHDESEIPEHPLDPLTIQEFNKVRTILSNHPLFKSSSTYTLNSVVLEEPDKKLVLKWKKGDPPLPRKASVVAYVKGDSHVLTVDLETGQVASHKTTGSVSGYPTMTMEDMVGVLEVPLKSTEFNRSITKRGVNLADLACLPISSGWYGTPVEENRRLIKVQCYSKEGTVNFYMKPIEGVTALVDMDRKEVLAISDNGQNIPVANGINTDYRYSIQKLNGELRLLNPISLEQPKGPSFTIEGHLVKWANWEFHLRPDPRAGTIISQAKVRDPDTSKLRSVMYKGFTSELFVPYMDPTEGWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAYYMDGVFASSDGTPYLQPNMICIFESYAGDIAWRHAECPITDLKVTEVRPKVTLVVRMAAAVANYDYIVDWEFQTDGLIRAKVGLSGILMVKGTTNENMDQVPNQEYLYGTLLSENIIGVIHDHFITYYLDMDVDGSDNSFVKVNIKKQETSRGESPRKSYLKAVKKVAKTEKDAQIRLQLYEPSEFHVVNPLKKTRVGNPVGYKLVPGATAASLLDPEDPPQKRAAFTNNQLWVTPYNKSEQWAGGLFVYQSKGDDTLQVWSNRDRPIENKDIVLWYTIGFHHIPCQEDYPIMPTVSSSFDLKPANFFERNPILGVPPNFEDDLPVCKARDSA*

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