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Report for Sequence Feature Glyma15g43080
Feature Type: gene_model
Chromosome: Gm15
Start: 50606695
stop: 50611648
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g43080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G07970 AT
Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439
SoyBase E_val: 7.00E-156 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0009830 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission
SoyBase N/A ISS
GO:0009901 GO-bp
Annotation by Michelle Graham. GO Biological Process: anther dehiscence
SoyBase N/A ISS
GO:0010047 GO-bp
Annotation by Michelle Graham. GO Biological Process: fruit dehiscence
SoyBase N/A ISS
GO:0045490 GO-bp
Annotation by Michelle Graham. GO Biological Process: pectin catabolic process
SoyBase N/A ISS
GO:0048235 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004650 GO-mf
Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity
SoyBase N/A ISS
PF00295 PFAM
Glycosyl hydrolases family 28
JGI ISS
UniRef100_I1MJQ2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MJQ2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2LAH5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Glycine max RepID=Q2LAH5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g43080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g43080
Paralog Evidence Comments
Glyma10g11480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g43080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g275400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g43080
Transcripts of Glyma15g43080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g43080.3 sequence type=transcript gene model=Glyma15g43080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CCATCCTTACAACTTTTTCTCCCTTTCATTCAGTTTGTTTTATTGCCGGCCGTAAAGTGAAAACATATGAGAATGTCTCCACAAAGTGTAGCTCTTCCATTTTTCATCACCATGTTTGTCTCATTTGGGGTTTGTTTTGGCTCTTTCCTAGAGGACACATATCATCTTACTAATTATCAACGTTACTCCATGAAGCCAAATAATGAACATTTTGGTATCATGACAAGGGCTTATGGATCTACCCCATCTACAAGGTCTCAAAGAAGGATTAATATTGATGACTATGGAGCCAAAGCTAGTGATGGAAGAGATGACACTGAGGCATTTGAGAAGGCATGGGATGAGGCATGTTCTACAGGGGGAATTCTTGTAGTTCCTGAAGAAAAGATATATCACTTAAAGCCAATAACTTTTTCAGGACCTTGCCTAACCAATACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTAAAATGTCAACATACCAAAATGATAGACTACACTGGATTAAGTTTGAAAATGTCACAAATCTCAGAGTTGATGGGGGTGGCACTATCAATGGCAATGGGAGAAAATGGTGGGAAAACTCTTGCAAAAGGAATGAAAACCTTCCATGCAAACCTGCGCCAACTGCTGTGACTTTCTATCAATGCAACAACTTGAGAGTGACAAACCTGAGGTTCAAAAATGCACAGCAAATGCATATAAGGTTTCAAAAATGCAACAATGTTACAGCTTCGAATTTGATCGTGAGAGCACCGGGGAACAGCCCCAACACTGATGGAATTCACGTCACAGAGACACGAAATATTCTCATAAGCAATAGTATCATTGGGACAGGTGATGACTGTATTTCCATAGTAAGTGGGTCCCAAAATGTACGAGCCATAGATGTCAAGTGTGGACCAGGGCATGGAATCAGCATTGGAAGTTTAGGAGCTGGTGACTCTAAAGCTCAAGTGTCCAACGTGTTAGTGAACAGAGCCACCTTTACAGGAACGACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCGAAAAATGTAAAATTTGTGAATATAACAATGCGAAATGTGACGAATCCCATAATTGTTGATCAAAACTACTGTGACCAGGACAAGCCATGCCATGAGAAGCAGTGAAATTGAGCAACATTGTATACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCAATCAAGTTTGACTGCAGCAAAACTGTTCCATGCAAAGGAATATACTTGCAAGATGTGATTTTAACACCAGAAGACCATGGTGGTGGTGGTAGTAGCACCATTGCTACATGTGAAAATGTTAGATATGTCCATCGGGGAAAGTTTTTTCCTCCATGCTCTACTTGATCAAAAAAGGAAAAAATATATATAAATGTTATTACGATATGTCAGTAGGGTAAAGTTATTAGAATTGTAAATAATAATAATATATACCAAATCAGTTTTTTTTTTTTTTCGGAACTAGCTAGCTAGGCACAAAGGCATTTACATGGCAGTCCAAAAGTAATTGAAAGCATCATTGTAATATTTAATATTTCGTTTTAGTGAATTTTAAACATTTCGTGTTGCTTTTA
Coding sequences of Glyma15g43080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g43080.2 sequence type=CDS gene model=Glyma15g43080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAATGTCTCCACAAAGTGTAGCTCTTCCATTTTTCATCACCATGTTTGTCTCATTTGGGGTTTGTTTTGGCTCTTTCCTAGAGGACACATATCATCTTACTAATTATCAACGTTACTCCATGAAGCCAAATAATGAACATTTTGGTATCATGACAAGGGCTTATGGATCTACCCCATCTACAAGGTCTCAAAGAAGGATTAATATTGATGACTATGGAGCCAAAGCTAGTGATGGAAGAGATGACACTGAGGCATTTGAGAAGGCATGGGATGAGGCATGTTCTACAGGGGGAATTCTTGTAGTTCCTGAAGAAAAGATATATCACTTAAAGCCAATAACTTTTTCAGGACCTTGCCTAACCAATACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTAAAATGTCAACATACCAAAATGATAGACTACACTGGATTAAGTTTGAAAATGTCACAAATCTCAGAGTTGATGGGGGTGGCACTATCAATGGCAATGGGAGAAAATGGTGGGAAAACTCTTGCAAAAGGAATGAAAACCTTCCATGCAAACCTGCGCCAACTGCTGTGACTTTCTATCAATGCAACAACTTGAGAGTGACAAACCTGAGGTTCAAAAATGCACAGCAAATGCATATAAGGTTTCAAAAATGCAACAATGTTACAGCTTCGAATTTGATCGTGAGAGCACCGGGGAACAGCCCCAACACTGATGGAATTCACGTCACAGAGACACGAAATATTCTCATAAGCAATAGTATCATTGGGACAGGTGATGACTGTATTTCCATAGTAAGTGGGTCCCAAAATGTACGAGCCATAGATGTCAAGTGTGGACCAGGGCATGGAATCAGCATTGGAAGTTTAGGAGCTGGTGACTCTAAAGCTCAAGTGTCCAACGTGTTAGTGAACAGAGCCACCTTTACAGGAACGACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCGAAAAATGTAAAATTTGTGAATATAACAATGCGAAATGTGACGAATCCCATAATTGTTGATCAAAACTACTGTGACCAGGACAAGCCATGCCATGAGAAGGACTCAGCAGTGAAATTGAGCAACATTGTATACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCAATCAAGTTTGACTGCAGCAAAACTGTTCCATGCAAAGGAATATACTTGCAAGATGTGATTTTAACACCAGAAGACCATGGTGGTGGTGGTAGTAGCACCATTGCTACATGTGAAAATGTTAGATATGTCCATCGGGGAAAGTTTTTTCCTCCATGCTCTACTTGA
>Glyma15g43080.3 sequence type=CDS gene model=Glyma15g43080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAATGTCTCCACAAAGTGTAGCTCTTCCATTTTTCATCACCATGTTTGTCTCATTTGGGGTTTGTTTTGGCTCTTTCCTAGAGGACACATATCATCTTACTAATTATCAACGTTACTCCATGAAGCCAAATAATGAACATTTTGGTATCATGACAAGGGCTTATGGATCTACCCCATCTACAAGGTCTCAAAGAAGGATTAATATTGATGACTATGGAGCCAAAGCTAGTGATGGAAGAGATGACACTGAGGCATTTGAGAAGGCATGGGATGAGGCATGTTCTACAGGGGGAATTCTTGTAGTTCCTGAAGAAAAGATATATCACTTAAAGCCAATAACTTTTTCAGGACCTTGCCTAACCAATACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTAAAATGTCAACATACCAAAATGATAGACTACACTGGATTAAGTTTGAAAATGTCACAAATCTCAGAGTTGATGGGGGTGGCACTATCAATGGCAATGGGAGAAAATGGTGGGAAAACTCTTGCAAAAGGAATGAAAACCTTCCATGCAAACCTGCGCCAACTGCTGTGACTTTCTATCAATGCAACAACTTGAGAGTGACAAACCTGAGGTTCAAAAATGCACAGCAAATGCATATAAGGTTTCAAAAATGCAACAATGTTACAGCTTCGAATTTGATCGTGAGAGCACCGGGGAACAGCCCCAACACTGATGGAATTCACGTCACAGAGACACGAAATATTCTCATAAGCAATAGTATCATTGGGACAGGTGATGACTGTATTTCCATAGTAAGTGGGTCCCAAAATGTACGAGCCATAGATGTCAAGTGTGGACCAGGGCATGGAATCAGCATTGGAAGTTTAGGAGCTGGTGACTCTAAAGCTCAAGTGTCCAACGTGTTAGTGAACAGAGCCACCTTTACAGGAACGACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCGAAAAATGTAAAATTTGTGAATATAACAATGCGAAATGTGACGAATCCCATAATTGTTGATCAAAACTACTGTGACCAGGACAAGCCATGCCATGAGAAGCAGTGA
Predicted protein sequences of Glyma15g43080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g43080.2 sequence type=predicted peptide gene model=Glyma15g43080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRMSPQSVALPFFITMFVSFGVCFGSFLEDTYHLTNYQRYSMKPNNEHFGIMTRAYGSTPSTRSQRRINIDDYGAKASDGRDDTEAFEKAWDEACSTGGILVVPEEKIYHLKPITFSGPCLTNTAFRVYGTIKAWPKMSTYQNDRLHWIKFENVTNLRVDGGGTINGNGRKWWENSCKRNENLPCKPAPTAVTFYQCNNLRVTNLRFKNAQQMHIRFQKCNNVTASNLIVRAPGNSPNTDGIHVTETRNILISNSIIGTGDDCISIVSGSQNVRAIDVKCGPGHGISIGSLGAGDSKAQVSNVLVNRATFTGTTNGVRIKTWQGGSGYAKNVKFVNITMRNVTNPIIVDQNYCDQDKPCHEKDSAVKLSNIVYQNIRGTSASEVAIKFDCSKTVPCKGIYLQDVILTPEDHGGGGSSTIATCENVRYVHRGKFFPPCST*
>Glyma15g43080.3 sequence type=predicted peptide gene model=Glyma15g43080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRMSPQSVALPFFITMFVSFGVCFGSFLEDTYHLTNYQRYSMKPNNEHFGIMTRAYGSTPSTRSQRRINIDDYGAKASDGRDDTEAFEKAWDEACSTGGILVVPEEKIYHLKPITFSGPCLTNTAFRVYGTIKAWPKMSTYQNDRLHWIKFENVTNLRVDGGGTINGNGRKWWENSCKRNENLPCKPAPTAVTFYQCNNLRVTNLRFKNAQQMHIRFQKCNNVTASNLIVRAPGNSPNTDGIHVTETRNILISNSIIGTGDDCISIVSGSQNVRAIDVKCGPGHGISIGSLGAGDSKAQVSNVLVNRATFTGTTNGVRIKTWQGGSGYAKNVKFVNITMRNVTNPIIVDQNYCDQDKPCHEKQ*