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Report for Sequence Feature Glyma15g43040

Feature Type:gene_model
Chromosome:Gm15
Start:50541269
stop:50550382
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g43040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05170AT Annotation by Michelle Graham. TAIR10: Cellulose synthase family protein | chr5:1530401-1535090 REVERSE LENGTH=1065 SoyBaseE_val: 0ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007389GO-bp Annotation by Michelle Graham. GO Biological Process: pattern specification process SoyBaseN/AISS
GO:0008361GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell size SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0009833GO-bp Annotation by Michelle Graham. GO Biological Process: primary cell wall biogenesis SoyBaseN/AISS
GO:0009834GO-bp Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010015GO-bp Annotation by Michelle Graham. GO Biological Process: root morphogenesis SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0030243GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0043255GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of carbohydrate biosynthetic process SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016759GO-mf Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity SoyBaseN/AISS
GO:0016760GO-mf Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity SoyBaseN/AISS
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI ISS
PTHR13301:SF25Panther JGI ISS
PF03552PFAM Cellulose synthase JGI ISS
UniRef100_D9U541UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase n=1 Tax=Leucaena leucocephala RepID=D9U541_LEULE SoyBaseE_val: 0ISS
UniRef100_I1MJP8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJP8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g43040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g43040 not represented in the dataset
Glyma15g43040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g43040
ParalogEvidenceComments
Glyma09g15620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g43040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g275000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g43040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g43040
>Glyma15g43040.1   sequence type=CDS   gene model=Glyma15g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAGTCAGAAGAAGCTGGGGCAAAGCCAATGAACACATTGGGTGGCCAAGTCTGCCAGATCTGTGGTGATAATATTGGGAACAATGTGAATGGCGATCCTTTCATTGCTTGCGATGTTTGTGCTTTCCCTGTCTGCAGGGCGTGCTATGAATATGAAAGGAAGGATGGAAATCAGTCTTGCCCTCAGTGCAAGACCCGGTACAAGAGGCACAAAGGAAGTCCTGCAATTCTTGGAGACCAGGAAGAGGATGGGGGTGCTGATGAGGGTGCTAGTGACTTAAATTACAATTCAGAAAATCAGAATGAAAAACAGAAGATTGAGCGCATGTTGGGCTGGCAAATGGCACATGGGCGAGCAGAGGAGGCTGTTGCTCCAAATTATGATAAGGAAGTTTCTCACAATCACATTCCTCTGCTCTCTGGTGGACAAGAGGTTTCTGGAGAATTATCTGCAGCCTCACCTGAGAGGCTGTCAATGGCATCTCCAGGTGGCCGAGGGAAGCGTGTCCATAATCTTCAATATTCCTCTGACCTTAATCAATCACCAAATATTAGGGTTGGGGATCCTGGATTGGGTAATGTGGCATGGAAAGAAAGAGTTGATGGCTGGAAAATGAAGCAAGATAAGAATGTTGCTCCAATGAGCACAGGCCAAGCTACTTCTGAAAGAGGAGCTGGAGATATTGATGCTAGTACTGATGTGCTTGTGGACGATTCCTTGTTGAATGATGAAGCTCGGCAACCCCTCTCTAGGAAGGTTTCTATTCCATCATCTAGGATCAATCCATATCGTATGGTCATTGCTCTGCGGCTGGTTATCCTATGCATTTTTCTGCATTATCGAATAACAAATCCTGTGCCCAATGCATATGCATTGTGGTTGATATCAGTCATATGTGAGATTTGGTTTGCCATATCGTGGATATTTGATCAATTCCCCAAGTGGCTCCCTGTGAACCGTGAAACCTATCTTGACAGACTTGCACTAAGATATGATCAGGAAGGGGAACCATCACAGCTAGCAGCTGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAAGAACCCCCACTTGTGACTGCGAACACTGTCCTATCTATTCTTTCTGTTGACTACCCAGTGGATAAGGTCTCATGTTATGTCTCTGATGATGGTGCTGCTATGTTGACATTTGAAGCTCTGGCTGAGACATCAGAGTTTGCTAGGAAATGGGTTCCTTTCAGCAAGAAATATAACATTGAACCTCGGGCACCTGAGTGGTATTTTGCACAGAAGATTGACTACTTGAAGGATAAGGTTCAACCATCATTTGTCAAAGATCGTAGAGCAATGAAGAGAGAATATGAAGAATTTAAAATTCGCGTCAATGGACTTGTTGCGAAGGCACAAAAGGTTCCTGAAGAAGGATGGGTGATGCAAGATGGTACGCCATGGCCTGGAAACAACACTAGAGACCATCCAGGAATGATTCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACCGAGGGTAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAACGTCCAGGGTTCCAACATCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGAGTCTCAGCAGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTTGGGAAAAATGTTTGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGGAATGATCGATATGCCAATCGCAATACTGTTTTCTTTGATATAAACTTGAGAGGTTTGGATGGCATTCAAGGTCCTGTTTATGTGGGTACTGGATGTGTCTTTAATAGAACAGCTTTGTATGGCTACGAGCCTCCTATTAAACCTAAGCATAAAAAGCCTGGGTTGCTTTCTTCACTCTGTGGTGGTAACCGAAAGAAGAGATCAAAATCTAGCAAGAAAGGCTCAGACAAGAAAAAATCTAGCAAGAATGTTGACCCAACTGTGCCCATCTTTAGTCTTGAGGATATAGAAGAGGGGGTGGAAGGTGCTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTCTTTGTTGCCTCTACACTCATGGAGAATGGTGGTGTTCCTCAGTCTGCAACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGTTGTGGTTATGAGGATAAAACAGAATGGGGAAGTGAGATTGGATGGATTTATGGTTCTGTCACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGTGGTTGGAGGTCTATATACTGCATGCCCAAGCTCCCAGCGTTTAAAGGTTCTGCTCCTATCAATCTTTCAGACCGTCTGAACCAAGTGCTTCGATGGGCTTTAGGTTCGGTGGAAATTCTTTTTAGTCGACACTGTCCCATCTGGTATGGTTATAGTGGAAGGCTAAAGTGGCTCGAGAGGTTCGCATATGTGAACACCACAATCTATCCAGTCACTTCCATTCCCCTTCTCATGTATTGTACCTTACCTGCTGTCTGTCTCCTGACTAACAAGTTCATTATTCCACAGATTAGTAACATTGCAAGTATATGGTTTATCTCTCTCTTTCTTTCCATCTTTGCAACCGGTATCCTTGAGATGAGGTGGAGTGGTGTTGGAATTGATGAGTGGTGGAGAAATGAACAATTTTGGGTTATTGGTGGTGTTTCGGCCCATCTTTTTGCCGTGTTCCAAGGTTTACTCAAAGTGCTTGCTGGAATTGACACTAACTTCACCGTTACCTCAAAGGCATCAGATGAGGATGGAGACTTCGCAGAACTCTACTTGTTCAAATGGACAACCCTTCTCATCCCACCCACGACACTTCTCATCATAAACCTGGTGGGGGTTGTTGCAGGCATCTCCTATGCCATCAACAGTGGTTACCAATCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTGATCATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGTCGCCAGAACAGAACACCAACCATTGTTGTAGTCTGGTCCATTCTTCTTGCATCCATTTTCTCTCTGCTGTGGGTCCGAATCGACCCGTTTACGACAAGAGTCACTGGTCCTGATGTTGAGCAGTGTGGAATCAACTGCTAG
Predicted protein sequences of Glyma15g43040
>Glyma15g43040.1   sequence type=predicted peptide   gene model=Glyma15g43040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTESEEAGAKPMNTLGGQVCQICGDNIGNNVNGDPFIACDVCAFPVCRACYEYERKDGNQSCPQCKTRYKRHKGSPAILGDQEEDGGADEGASDLNYNSENQNEKQKIERMLGWQMAHGRAEEAVAPNYDKEVSHNHIPLLSGGQEVSGELSAASPERLSMASPGGRGKRVHNLQYSSDLNQSPNIRVGDPGLGNVAWKERVDGWKMKQDKNVAPMSTGQATSERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIALRLVILCIFLHYRITNPVPNAYALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLALRYDQEGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRVNGLVAKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGLLSSLCGGNRKKRSKSSKKGSDKKKSSKNVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYSGRLKWLERFAYVNTTIYPVTSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC*






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