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Report for Sequence Feature Glyma15g43021

Feature Type:gene_model
Chromosome:Gm15
Start:50461555
stop:50471143
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g43021
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08040AT Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr3:2566593-2569397 REVERSE LENGTH=526 SoyBaseE_val: 0ISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0006879GO-bp Annotation by Michelle Graham. GO Biological Process: cellular iron ion homeostasis SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0071281GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion SoyBaseN/AISS
GO:0071369GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus SoyBaseN/AISS
GO:0071732GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015137GO-mf Annotation by Michelle Graham. GO Molecular Function: citrate transmembrane transporter activity SoyBaseN/AISS
GO:0015238GO-mf Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI ISS
PTHR11206Panther MULTIDRUG RESISTANCE PUMP JGI ISS
PTHR11206:SF3Panther ETHIONINE RESISTANCE GENE PRODUCT-RELATED JGI ISS
PF01554PFAM MatE JGI ISS
UniRef100_C1IIX2UniRef Annotation by Michelle Graham. Best UniRef hit: Ferric reductase defective 3a n=1 Tax=Glycine max RepID=C1IIX2_SOYBN SoyBaseE_val: 0ISS
UniRef100_C1IIX2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ferric reductase defective 3a n=1 Tax=Glycine max RepID=C1IIX2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g43021
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g43021 not represented in the dataset
Glyma15g43021 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g43021
ParalogEvidenceComments
Glyma09g15550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g43021 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g274600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g43021
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g43021
>Glyma15g43021.1   sequence type=CDS   gene model=Glyma15g43021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAGAATGGTAGCTCAAGTAATGCACCCAAGAACAAGAGAAACCTACCTGTCTCAGTTTTCTTCAAAGATGCAAGACATGTTTTCAAGATGGATTCCATTGCTAAGGAGATTCTTGGGATTGCATTCCCATCTGCACTGGCTGTTGCTGCTGATCCCATTGCTTCTCTTATAGACACAGCATTCATAGGCCATTTGGGGCCCGTGGAGCTTGCTGCCGCAGGAGTGTCCATTGCTTTGTTCAACCAAGCTTCAAGGATAACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTTGTGGCTGAGGAAAGTACCATTGAAAAAATCAATACAGAAAAGAAGTTAACTGATAAGACCAAGTCCAAGGAAGTAATGCACGATGATCATTCGCTTCAAGACATAGAGAAAGGTGCATCCAAAGAGAAAAATGAGACTCCAACAGAATCTTCTGCTGTAAGGGGTAACACAACTTGTGTACCTGAGAATGTGGAAATGGATGATTGCAATACAAGTATATGCAAGTCTACCACTGAAACTAGTAGTAGTAGCAACAAGAGTGTTTCAAAAGCTGGAAGGAAGAAGCGACACATTGCTTCAGCATCAACAGCATTACTTTTTGGCACAATCCTTGGTCTCCTTCAAGCTACAACCCTTATATTTGCCGCCAAACCTCTATTAGCTGCAATGGGTCTGAAACCTGATTCTCCTATGCTAAACCCTGCTATTAAATACTTGAGATTGAGATCATTAGGTGCTCCTGCAGTGCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGATTCAAGGACACTACAACTCCTTTATATGTTATTCTTTCGGGGTATGCATTGAATGTCATTTTGGATCCAGTGCTTATCTTCTACTGCAAATTGGGCATCAAAGGTGCAGCCATTTCACATGTGCTCTCTCAGTACTTGATGGCATTGGCACTCATGGTGATATTAACTAGAAAAGTGGATCTTGTTCCTCCAAGTATTAAAGACTTGCAGATTTTCAGGTTTCTTAAAAATGGAGGTCTGTTGTTGGCAAGAGTAATAGCTGTGACATTCTGCCAGACCTTGGCAGCCTCATTGGCAGCAAGGTTTGGTCCAATTCCTATGGCTGCATTCCAAACCTGCTTGCAAGTGTGGCTCACATCTTCCCTTCTTGCTGATGGTTTGGCTGTTGCTGTACAGGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGATTATGAAAAGGTGCTTGTTGCGGCAACACGAACACTGCAGATGAGTTTTGTTTTAGGAGTTGGACTCTCTTTTGCAGTTGGAGTTGGATTGTATTTTGGAGCTGGAATCTTTTCCAAAAGTGTTCTTGTTGTGCACTTAATCAGAATAGGCCTCCCGTTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTCGTATTTGATGGTGTGAACTATGGAGCATCTGATTTTGCATATTCTGCATACTCCTTGGTCACGGTGTCACTAGCAAGTGTTGCTTCATTGTTCCTTCTCTCTAAGAGCAAAGGTTTCGTTGGGATCTGGATTGCACTAACCATCTACATGAGTCTTCGCATGTTTGCTGGCGTGTGGAGGATGGGAACAGGAACTGGACCTTGGCGTTTTCTCAGAGGCCGCTCAATGTCTTGA
Predicted protein sequences of Glyma15g43021
>Glyma15g43021.1   sequence type=predicted peptide   gene model=Glyma15g43021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDENGSSSNAPKNKRNLPVSVFFKDARHVFKMDSIAKEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEESTIEKINTEKKLTDKTKSKEVMHDDHSLQDIEKGASKEKNETPTESSAVRGNTTCVPENVEMDDCNTSICKSTTETSSSSNKSVSKAGRKKRHIASASTALLFGTILGLLQATTLIFAAKPLLAAMGLKPDSPMLNPAIKYLRLRSLGAPAVLLSLAMQGIFRGFKDTTTPLYVILSGYALNVILDPVLIFYCKLGIKGAAISHVLSQYLMALALMVILTRKVDLVPPSIKDLQIFRFLKNGGLLLARVIAVTFCQTLAASLAARFGPIPMAAFQTCLQVWLTSSLLADGLAVAVQAILACSFAEKDYEKVLVAATRTLQMSFVLGVGLSFAVGVGLYFGAGIFSKSVLVVHLIRIGLPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVTVSLASVASLFLLSKSKGFVGIWIALTIYMSLRMFAGVWRMGTGTGPWRFLRGRSMS*






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