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Report for Sequence Feature Glyma15g42940

Feature Type:gene_model
Chromosome:Gm15
Start:50350131
stop:50355295
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g42940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13450AT Annotation by Michelle Graham. TAIR10: delta subunit of Mt ATP synthase | chr5:4310558-4311941 REVERSE LENGTH=238 SoyBaseE_val: 2.00E-93ISS
GO:0000302GO-bp Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0010039GO-bp Annotation by Michelle Graham. GO Biological Process: response to iron ion SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0015986GO-bp Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled proton transport SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0055072GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000275GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005753GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0046933GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism SoyBaseN/AISS
GO:0050897GO-mf Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding SoyBaseN/AISS
KOG1662 KOG Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 JGI ISS
PTHR11910Panther ATP SYNTHASE DELTA CHAIN JGI ISS
PF00213PFAM ATP synthase delta (OSCP) subunit JGI ISS
UniRef100_I1MJN7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJN7_SOYBN SoyBaseE_val: 7.00E-176ISS
UniRef100_I1MJN8UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase n=1 Tax=Glycine max RepID=I1MJN8_SOYBN SoyBaseE_val: 3.00E-120ISS

Expression Patterns of Glyma15g42940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g42940 not represented in the dataset
Glyma15g42940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42940
ParalogEvidenceComments
Glyma08g16470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g273900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g42940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g42940
>Glyma15g42940.2   sequence type=transcript   gene model=Glyma15g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTAAAAAGAAATAGAACGAGCCACGTGTTCAAATTTACTGCTGCGTCACCTGGGGCTTCAATAGCCCTATTCAGATTCAGTTCCTCTTTGCTTCTCTCTCCAAACAAAACAACAGAACCAAACTCGCCAAAACTAGGGTTTTGCATTGATGGCACTGTGCAACCGCGTCAGATCGGGAATCTCTCTCTTCACCAAATCCACGTTCCTCACTTCCCAGCGATCCACTCTCCAACGATCCCTCGTTGCCCCTTTCATTTCCCTCGCCTCCAGAAATTACGCCAACGTGCCGGGGCAAAAGGAAACCAAAGTTAAGGTCCCTCTGGCTTTGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCATCTGTGAAAGCCAATGCAGTGGAAAAGGTTGAGACTGAGCTTCTGCAATTTGTTGAGGCAGTAAAGAATAGTCCCATATTTTCACAGTTTATAAGGGACTTGTCTGTGGCTAAGGATGTTAGAGTTAAAGTTATCCAGGATATTTGTGGGGAAGCCAAGTTTTCGGATGTTACAAAGAACTTCCTTGTTATTGTTGCTGAGAATGGAAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGCACAGTTGTCAATGGCATATAAGGGAGAAGTGCAAGCGACTGTGACCACTGTTGTTGTAAGTAGTGTTAACAAATTCAAGTTGTAGCTTGCTAAATGATTAGTGGGATGTGATATGAAGTTTATCTCATTGAACAACAGTGTGATGTGATTTAGTTACTCCATTACCTAACTATAATTTTTTAACAGCCTCTTCCCCCTGAAGAGGAAAAGGCATTGAAGGAGACTCTTCAGGAAATAATAGGTTCTGGAGCGAAGGTTCATCTTGAACAGAAGATTGATCCAAGCATACTTGGTGGGCTTGTGCTTGAATTTAGCCAGAAGGTCTTTGACATGTCAATTAAGACCAGGGCACAACAGATGGAGAGGATCCTCCGAGAGCCCGTGTCCATTGCCAACATCTAGAAGACTATAATCTCTCCTGACAATCTGTGTTATCATGGTTTAAAGAAAGAAGTATTACATTCTTGTTCATTATAAATTGTGTGGATGTAGATTTTTATGGGATGGAATGCCATCATTTTGCAAATAAAAGCTACCTCTTTCCAACTTCTTGTTATGCTTCATTGCCATTTCAGTGTATCTGAATGTGTTTTGATTTGGCATTTTGAGATTTTAATTAGTGGGTGCATCTGTCGTAATCTGGATACCTAATAATGATGCTTCGTACTACAAAGTAAAGGAAGATGAAGTTGTATGTAGCCGTTGGATGGGTACTATAATTTAATTAATGATGAATATATCTTTACTCTTAATTTATACATTATTTTAGAGGAGTTA
Coding sequences of Glyma15g42940
>Glyma15g42940.1   sequence type=CDS   gene model=Glyma15g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTGTGCAACCGCGTCAGATCGGGAATCTCTCTCTTCACCAAATCCACGTTCCTCACTTCCCAGCGATCCACTCTCCAACGATCCCTCGTTGCCCCTTTCATTTCCCTCGCCTCCAGAAATTACGCCAACGTGCCGGGGCAAAAGGAAACCAAAGTTAAGGTCCCTCTGGCTTTGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCATCTGTGAAAGCCAATGCAGTGGAAAAGGTTGAGACTGAGCTTCTGCAATTTGTTGAGGCAGTAAAGAATAGTCCCATATTTTCACAGTTTATAAGGGACTTGTCTGTGGCTAAGGATGTTAGAGTTAAAGTTATCCAGGATATTTGTGGGGAAGCCAAGTTTTCGGATGTTACAAAGAACTTCCTTGTTATTGTTGCTGAGAATGGAAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGCACAGTTGTCAATGGCATATAAGGGAGAAGTGCAAGCGACTGTGACCACTGTTGTTCCTCTTCCCCCTGAAGAGGAAAAGGCATTGAAGGAGACTCTTCAGGAAATAATAGGTTCTGGAGCGAAGGTTCATCTTGAACAGAAGATTGATCCAAGCATACTTGGTGGGCTTGTGCTTGAATTTAGCCAGAAGGTCTTTGACATGTCAATTAAGACCAGGGCACAACAGATGGAGAGGATCCTCCGAGAGCCCGTGTCCATTGCCAACATCTAG

>Glyma15g42940.2   sequence type=CDS   gene model=Glyma15g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTGTGCAACCGCGTCAGATCGGGAATCTCTCTCTTCACCAAATCCACGTTCCTCACTTCCCAGCGATCCACTCTCCAACGATCCCTCGTTGCCCCTTTCATTTCCCTCGCCTCCAGAAATTACGCCAACGTGCCGGGGCAAAAGGAAACCAAAGTTAAGGTCCCTCTGGCTTTGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCATCTGTGAAAGCCAATGCAGTGGAAAAGGTTGAGACTGAGCTTCTGCAATTTGTTGAGGCAGTAAAGAATAGTCCCATATTTTCACAGTTTATAAGGGACTTGTCTGTGGCTAAGGATGTTAGAGTTAAAGTTATCCAGGATATTTGTGGGGAAGCCAAGTTTTCGGATGTTACAAAGAACTTCCTTGTTATTGTTGCTGAGAATGGAAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGCACAGTTGTCAATGGCATATAAGGGAGAAGTGCAAGCGACTGTGACCACTGTTGTTGTAAGTAGTGTTAACAAATTCAAGTTGTAG
Predicted protein sequences of Glyma15g42940
>Glyma15g42940.1   sequence type=predicted peptide   gene model=Glyma15g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALCNRVRSGISLFTKSTFLTSQRSTLQRSLVAPFISLASRNYANVPGQKETKVKVPLALFGGSGNYASALYIASVKANAVEKVETELLQFVEAVKNSPIFSQFIRDLSVAKDVRVKVIQDICGEAKFSDVTKNFLVIVAENGRLKNIDTIAKRFAQLSMAYKGEVQATVTTVVPLPPEEEKALKETLQEIIGSGAKVHLEQKIDPSILGGLVLEFSQKVFDMSIKTRAQQMERILREPVSIANI*

>Glyma15g42940.2   sequence type=predicted peptide   gene model=Glyma15g42940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALCNRVRSGISLFTKSTFLTSQRSTLQRSLVAPFISLASRNYANVPGQKETKVKVPLALFGGSGNYASALYIASVKANAVEKVETELLQFVEAVKNSPIFSQFIRDLSVAKDVRVKVIQDICGEAKFSDVTKNFLVIVAENGRLKNIDTIAKRFAQLSMAYKGEVQATVTTVVVSSVNKFKL*






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