Glyma15g42930 - SoyBase

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Report for Sequence Feature Glyma15g42930

Feature Type:	gene_model
Chromosome:	Gm15
Start:	50343551
stop:	50344787
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52105	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr3:19323394-19323606 FORWARD LENGTH=70	SoyBase	E_val: 4.00E-22	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B7EG04	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA clone:J023009A03, full insert sequence n=2 Tax=Oryza RepID=B7EG04_ORYSJ	SoyBase	E_val: 7.00E-09	ISS
UniRef100_I1KTM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KTM5_SOYBN	SoyBase	E_val: 1.00E-39	ISS

Expression Patterns of Glyma15g42930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42930

Paralog	Evidence	Comments
Glyma08g16460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g273800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g42930

Limit To All Plant Sequences

>Glyma15g42930.3   sequence type=transcript   gene model=Glyma15g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTAGGTGATTGAGCAGATTGTCAGATTGACACTTTCTTAAACTTTCAAGAGCTTGCTTTCCCTTTTCTCTTTCTGTTTGTTGACATTCATCTCTCATTCCTTTATCTCTTCCTCGATTTTGTGTTCAAGGTTAGTGAACCTTTTCTATTTGGAATCAAAGTCTTCAACTTTGGCTATTTGGAGACCAAAAGCAATGCTGCCTTTGTTCTTCTCAGTGGCTTTCTCTGCTGTTCCTTTGATCCTCTATATTCCACCACTCAGAAGCTTAAACCTCTTTGTAGAGACCATTGAAGACATGGCAAGAGAGTCAAGAATCCACACCAACAGGATTTATCCTCGTCTGCGTGTGGCTTGGTCAAGGGTCATGAATTGTATACTGTGTAACAGAACAAGGTAGATTCATTGAAGAATGCTCTTGAGCCGGATCTTAATATTTGGGTGGCTAAGGTAGCGCCACATGTTTGTACCTCACATGCCAGAGTATACCAACCTGATGATAAGTACAAATCAAAACAGAGAACAATTTTTGGACCTTTTTGTGGAAAATATATTTTTAGTTTGCAAAAAGATGACCAATTCATGTGCTAGAAGGATACGGAGTTAAGTCGGGGACATGTGTGGTGTTCGAAGATGGAGGAGTGTTAGAGACAATGTGTCATCAAGAGACGAGGATTCTCAATTTTTCTTCCTTTTTTTAAAAGAAAAAATATTTCTTTCAATTGGTGGTTATTTGTAATTTCTAATTGTAATGGATTTTTGGTGGTTATTTGTAATTTGAATTAAAGTTTATGAACTTAATTTTGAATTCATCACCGTCACCATTGGGTTTTGT

Coding sequences of Glyma15g42930

Limit To All Plant Sequences

>Glyma15g42930.2   sequence type=CDS   gene model=Glyma15g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCCTTTGTTCTTCTCAGTGGCTTTCTCTGCTGTTCCTTTGATCCTCTATATTCCACCACTCAGAAGCTTAAACCTCTTTGTAGAGACCATTGAAGACATGGCAAGAGAGTCAAGAATCCACACCAACAGGATTTATCCTCGTCTGCGTGTGGCTTGGTCAAGGGTCATGAATTGTATACTGTGTAACAGAACAAGATTTGGGTGGCTAAGGTAG

>Glyma15g42930.3   sequence type=CDS   gene model=Glyma15g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCCTTTGTTCTTCTCAGTGGCTTTCTCTGCTGTTCCTTTGATCCTCTATATTCCACCACTCAGAAGCTTAAACCTCTTTGTAGAGACCATTGAAGACATGGCAAGAGAGTCAAGAATCCACACCAACAGGATTTATCCTCGTCTGCGTGTGGCTTGGTCAAGGGTCATGAATTGTATACTGTGTAACAGAACAAGGTAG

Predicted protein sequences of Glyma15g42930

Limit To All Plant Sequences

>Glyma15g42930.2   sequence type=predicted peptide   gene model=Glyma15g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLFFSVAFSAVPLILYIPPLRSLNLFVETIEDMARESRIHTNRIYPRLRVAWSRVMNCILCNRTRFGWLR*

>Glyma15g42930.3   sequence type=predicted peptide   gene model=Glyma15g42930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLFFSVAFSAVPLILYIPPLRSLNLFVETIEDMARESRIHTNRIYPRLRVAWSRVMNCILCNRTR*

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