SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G08505 | AT | Annotation by Michelle Graham. TAIR10: zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr3:2580603-2582043 REVERSE LENGTH=323 | SoyBase | E_val: 1.00E-158 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1039 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR11224 | Panther | MAKORIN | JGI | ISS | |
| PTHR11224:SF10 | Panther | MAKORIN 2 | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF00642 | PFAM | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | JGI | ISS | |
| UniRef100_G7IWL8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase makorin n=1 Tax=Medicago truncatula RepID=G7IWL8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MJM5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJM5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g42750 not represented in the dataset |
Glyma15g42750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g16340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g272400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g42750.2 sequence type=transcript gene model=Glyma15g42750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTTTGTTGGGAAGTTTTGGACACCAAGCTGTAACAAACACAACATTGTGTAGTTTCTCTCCTCCTATGTTTTTTACCACCATCCAAATCCAATTTCCCATCTTTCCTCGTATTTCCATTCCTTTTATATCTCTTTGCCCCCAACACCACCGTTTCTCTCGGGCTCTCTCAACCTTTTCTTAATTTAAGTGGCTGCAAAGCCCCACGTGTTGCCTCCTTCACTCTTTTGGCTGCCCCCACTTTTTTTGTTCACCTCTTTCGTCAACCAATAATTCCTTTGGAGGTTTAGGGTTTTGATCCTTGCAGCTCTCTCTTAATTAAAGGATATTTCTTTCTTTCTTTCTTTTTTTTTTTTTTCTCTTTTCAATAACCGCCATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGAATGGTGTTGTTCGTATGTTCCAGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAAAATAAGTTCAATTTTTAAAGCAGATAAATCCAAGTATGGATTGATGGTGGTATACTCTATTTGAAGCATGGTGGAAAGCACTCTTTTAGCCATCAGTGAGACTTTTAGAAGCATTTCTTTTGTCTGGTGGATTTCAATGTTAATATGCAAATATTGATATTGGGGTGATGAAGTTTTCCTGTTCACATTATTGAGATCTTAAGATATACCTTTTTATTGTATACTGGGATTCCCTTGCTGTGGGTGGCACTGCACCAAGAGTCTTGGGAAAGGGTTCAACATATGTATCGGTTTTGTTATCTCTTATAGGACTTTGTCATGGCCCTTTAGGGGCTTATATTGGTGACCCGTTTCCTTTTGATGAATATACGAGTATAATCGAAGTTTCACCCATTGAATATACGACTCCTAGTGAAATTTCATTCAATTTAAGAAGCCAGTATAGGGGGAAGTTCTGTTATTTAATACTATTAATTTAGTTTTACTTGGTCAA
>Glyma15g42750.1 sequence type=CDS gene model=Glyma15g42750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGA >Glyma15g42750.2 sequence type=CDS gene model=Glyma15g42750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGA
>Glyma15g42750.1 sequence type=predicted peptide gene model=Glyma15g42750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSSAPSSSVTEPQTPVSDTVAFGNTRATFNGVATAAEFSLSRSPYFLPSEPAWNQEPVWNQEFGYNEPLGEDNVGQTIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKHLDALKRSQEIECSVCLELVLSKPTAAECKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGEGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKDIRLSDFLSNMHLR* >Glyma15g42750.2 sequence type=predicted peptide gene model=Glyma15g42750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSSAPSSSVTEPQTPVSDTVAFGNTRATFNGVATAAEFSLSRSPYFLPSEPAWNQEPVWNQEFGYNEPLGEDNVGQTIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKHLDALKRSQEIECSVCLELVLSKPTAAECKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGEGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKDIRLSDFLSNMHLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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