Report for Sequence Feature Glyma15g42690
Feature Type: gene_model
Chromosome: Gm15
Start: 50127807
stop: 50134819
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g42690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G52120 AT
Annotation by Michelle Graham. TAIR10: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein | chr3:19329243-19331738 FORWARD LENGTH=443
SoyBase E_val: 0 ISS
GO:0006396 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA processing
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
PTHR23340 Panther
ARGININE/SERINE RICH SPLICING FACTOR SF4/14
JGI ISS
PF01585 PFAM
G-patch domain
JGI ISS
PF01805 PFAM
Surp module
JGI ISS
UniRef100_G7LDP5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor 4-like protein n=1 Tax=Medicago truncatula RepID=G7LDP5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MJM3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJM3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g42690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g42690
Paralog Evidence Comments
Glyma08g16200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g42690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g272000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g42690
Coding sequences of Glyma15g42690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g42690.1 sequence type=CDS gene model=Glyma15g42690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACAAGGGGGTGCCTCCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGATAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCTCCCAATCCTTCCTTTACCAAAACGCCTGTGGACTTGAAGGTTAATGACACAAGGAAAATATCCCAGGGTGGTTCCAGTGGAAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAACAGAAGCTGGGTATGTTTCAAACGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAATTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGTCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAAATGCTCTTGTGCAATCAAGGGAATCACAGGTGCCTCGTAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAATGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCATCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAAGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAAAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTATGGAGGCCGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCCGGTAATGTTAAGAAGAATAACCTGGGGGTTGGGGCTCAGGAACCTGGAGAGGTGAGTGCTGAGGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACAGACCCAATCCCCTGAACAATCCTCGCAAGGCTTATTACTGA
Predicted protein sequences of Glyma15g42690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g42690.1 sequence type=predicted peptide gene model=Glyma15g42690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDKGVPPSLFVNDGSFMERFKQLQQEQDKGKNVKLEDSKPIKVISGSLSPNPSFTKTPVDLKVNDTRKISQGGSSGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYRLAQEENALVQSRESQVPRNGGTSTSSSKQTNGHQRSSQQHTYQIPASALYESADNPRASGFSIQTSSVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLATCNDAAAQKAAMEAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY*