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Report for Sequence Feature Glyma15g42680

Feature Type:gene_model
Chromosome:Gm15
Start:50113736
stop:50116842
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42280AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359 SoyBaseE_val: 8.00E-43ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046685GO-bp Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR10985Panther BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED JGI ISS
PTHR10985:SF42Panther SUBFAMILY NOT NAMED JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7IWI2UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Medicago truncatula RepID=G7IWI2_MEDTR SoyBaseE_val: 8.00E-179ISS
UniRef100_I1MJM2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJM2_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g16190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g271900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g42680.2   sequence type=transcript   gene model=Glyma15g42680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGCAAGACAAAATAATAATCTCTGCTTTCTACTCTCACAACTCTTTATTTTCTTCCTCTATCTCAACTGTGTTCGTGTGTATGCTTTTGAGTTCAGGGACAGACTCAAGGAGCTGAAAGACAAGAAGAAACTTGGATTTGAATCAGCCAAGATTTGAGTTACACGTATGCCCTTTGTGCCTTTCAAGGTAATTGCAAAGATGAGTGTTATGTATAGTCCTGTTCTCAATTACTCAGATGTGGAGTATCAGCTATGGAAAAACCAAGACATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAATCCAATTCTGGACTATTGAGGTACTGTTCTGCTCCAAGCTCAATGCTGGCAAGCCTTATTGACAACACCATTCATGGCTGTGTCAATGAGGAACCATTCACAAGTGAGAATCAGCAGCAGCAGCAGCATTATCTTCCATCCACGAGTTCAGAAATGGAGACCATGTTGTCCAAAATGCCACCATCCAACATTGGATGGAGTAACTCAGAACCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGGCAATCTGTTCCACAAGGACCACCAAAGCAGAATGGTTATTCTTATGGTGGCTCTCAGTTAATTTACCAATCTCAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCATTGCTTCTATCAGTGCTTTTGATGGCTCTTTTGGTGCGGTGAACTCCATGGCTTCAGAGGACTCCATTCAATCTAAAATGGGTGTCAGGAATTGCTCCAATCTCTTTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCGGCATTGAGAGAAGTAGGAAGCTTTAAAGACAATGATGTTTCAAATGGACAAGCCACCGCATCAACTAGTGGGTTGCATAGTTCTCTTACTTTCTCATCGAGATCATCTTCATGCTTGAAACAGATGCCACCACAAATAGCTGAAAATGGAAATGAAAGCCTAGAAGAAAATTATGATCAAAGTAGAAACCTAGTAAATGACAACGGTAGCTCAAAATGTTACATACCTAGCTTCACCAATGAATTCTGGGAAAGTTCTGCATTCAATGCCCCCAAAACAGAAAATGAAGATGAAATCATGTTTTCCACTTCAAATGGTTTGGAATCTCAGGAAACAGATTTCAGCTATCAAAATCATGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCATCCATAGAGATGTTTCTTCAAATTCAAGGTTCTGTTCCTTATAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAGAGAAGAACAAGAATTAGTGAAAGAATCAAGAAACTGCAAGACCTTTTTCCAAGATCAGAAAAGCCAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGCACATTAAGGACCTGCAACAACAAGTTCAGATACTCTCCGATCGTAAGGCAAAGTGCAAATGTACCAGGAATGAGAAGCATTACACTAGAACTTGTGCCTGATTTATTTACATGTAGATAGCAAAAGGATGGAAGATTTTTTAGTGTGCCAAAGTAAGCAATTGTAATTATATAAAATAATGCTGACACTTGTCTGATGTGAGTTTAGGAAGAGGTGATTTTTTTTTTTCATTTATTTCCCTTTTTCTTTCTTCATAGTTTGATCTAAGGACCATAAAGTCCTAGCATGTTTAGCAGGAGTCATGTAGCTTTTCATTTTTTTTTTCATATGAGAAGTTTTGTTGGGTTAAAGAATTATCTGAAACAAACTTCAATACAATGTTCAATACTGAAATTTATAGAGATTGCTTTTGAAACTAAAAATTATGATCTTTCAG

>Glyma15g42680.1   sequence type=CDS   gene model=Glyma15g42680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGTTATGTATAGTCCTGTTCTCAATTACTCAGATGTGGAGTATCAGCTATGGAAAAACCAAGACATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAATCCAATTCTGGACTATTGAGGTACTGTTCTGCTCCAAGCTCAATGCTGGCAAGCCTTATTGACAACACCATTCATGGCTGTGTCAATGAGGAACCATTCACAAGTGAGAATCAGCAGCAGCAGCAGCATTATCTTCCATCCACGAGTTCAGAAATGGAGACCATGTTGTCCAAAATGCCACCATCCAACATTGGATGGAGTAACTCAGAACCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGGCAATCTGTTCCACAAGGACCACCAAAGCAGAATGGTTATTCTTATGGTGGCTCTCAGTTAATTTACCAATCTCAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCATTGCTTCTATCAGTGCTTTTGATGGCTCTTTTGGTGCGGTGAACTCCATGGCTTCAGAGGACTCCATTCAATCTAAAATGGGTGTCAGGAATTGCTCCAATCTCTTTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCGGCATTGAGAGAAGTAGGAAGCTTTAAAGACAATGATGTTTCAAATGGACAAGCCACCGCATCAACTAGTGGGTTGCATAGTTCTCTTACTTTCTCATCGAGATCATCTTCATGCTTGAAACAGATGCCACCACAAATAGCTGAAAATGGAAATGAAAGCCTAGAAGAAAATTATGATCAAAGTAGAAACCTAGTAAATGACAACGGTAGCTCAAAATGTTACATACCTAGCTTCACCAATGAATTCTGGGAAAGTTCTGCATTCAATGCCCCCAAAACAGAAAATGAAGATGAAATCATGTTTTCCACTTCAAATGGTTTGGAATCTCAGGAAACAGATTTCAGCTATCAAAATCATGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCATCCATAGAGATGTTTCTTCAAATTCAAGGTTCTGTTCCTTATAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAGAGAAGAACAAGAATTAGTGAAAGAATCAAGAAACTGCAAGACCTTTTTCCAAGATCAGAAAAGCCAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGCACATTAAGGACCTGCAACAACAAGTTCAGATACTCTCCGATCGTAAGGCAAAGTGCAAATGTACCAGGAATGAGAAGCATTACACTAGAACTTGTGCCTGA

>Glyma15g42680.2   sequence type=CDS   gene model=Glyma15g42680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTTTGTGCCTTTCAAGGTAATTGCAAAGATGAGTGTTATGTATAGTCCTGTTCTCAATTACTCAGATGTGGAGTATCAGCTATGGAAAAACCAAGACATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAATCCAATTCTGGACTATTGAGGTACTGTTCTGCTCCAAGCTCAATGCTGGCAAGCCTTATTGACAACACCATTCATGGCTGTGTCAATGAGGAACCATTCACAAGTGAGAATCAGCAGCAGCAGCAGCATTATCTTCCATCCACGAGTTCAGAAATGGAGACCATGTTGTCCAAAATGCCACCATCCAACATTGGATGGAGTAACTCAGAACCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGGCAATCTGTTCCACAAGGACCACCAAAGCAGAATGGTTATTCTTATGGTGGCTCTCAGTTAATTTACCAATCTCAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCATTGCTTCTATCAGTGCTTTTGATGGCTCTTTTGGTGCGGTGAACTCCATGGCTTCAGAGGACTCCATTCAATCTAAAATGGGTGTCAGGAATTGCTCCAATCTCTTTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCGGCATTGAGAGAAGTAGGAAGCTTTAAAGACAATGATGTTTCAAATGGACAAGCCACCGCATCAACTAGTGGGTTGCATAGTTCTCTTACTTTCTCATCGAGATCATCTTCATGCTTGAAACAGATGCCACCACAAATAGCTGAAAATGGAAATGAAAGCCTAGAAGAAAATTATGATCAAAGTAGAAACCTAGTAAATGACAACGGTAGCTCAAAATGTTACATACCTAGCTTCACCAATGAATTCTGGGAAAGTTCTGCATTCAATGCCCCCAAAACAGAAAATGAAGATGAAATCATGTTTTCCACTTCAAATGGTTTGGAATCTCAGGAAACAGATTTCAGCTATCAAAATCATGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCATCCATAGAGATGTTTCTTCAAATTCAAGGTTCTGTTCCTTATAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAGAGAAGAACAAGAATTAGTGAAAGAATCAAGAAACTGCAAGACCTTTTTCCAAGATCAGAAAAGCCAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGCACATTAAGGACCTGCAACAACAAGTTCAGATACTCTCCGATCGTAAGGCAAAGTGCAAATGTACCAGGAATGAGAAGCATTACACTAGAACTTGTGCCTGA

>Glyma15g42680.1   sequence type=predicted peptide   gene model=Glyma15g42680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVMYSPVLNYSDVEYQLWKNQDMDSSIGHPQQHCHQSNSGLLRYCSAPSSMLASLIDNTIHGCVNEEPFTSENQQQQQHYLPSTSSEMETMLSKMPPSNIGWSNSEPLQEFGGKPVKQEIGQSVPQGPPKQNGYSYGGSQLIYQSQQIQGLPNGSSIASISAFDGSFGAVNSMASEDSIQSKMGVRNCSNLFRQKSSPAGFFSIENDLAALREVGSFKDNDVSNGQATASTSGLHSSLTFSSRSSSCLKQMPPQIAENGNESLEENYDQSRNLVNDNGSSKCYIPSFTNEFWESSAFNAPKTENEDEIMFSTSNGLESQETDFSYQNHGLTHHLSLPSSSTKMSSIEMFLQIQGSVPYKIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPRSEKPTSTADMLDLAVEHIKDLQQQVQILSDRKAKCKCTRNEKHYTRTCA*

>Glyma15g42680.2   sequence type=predicted peptide   gene model=Glyma15g42680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFVPFKVIAKMSVMYSPVLNYSDVEYQLWKNQDMDSSIGHPQQHCHQSNSGLLRYCSAPSSMLASLIDNTIHGCVNEEPFTSENQQQQQHYLPSTSSEMETMLSKMPPSNIGWSNSEPLQEFGGKPVKQEIGQSVPQGPPKQNGYSYGGSQLIYQSQQIQGLPNGSSIASISAFDGSFGAVNSMASEDSIQSKMGVRNCSNLFRQKSSPAGFFSIENDLAALREVGSFKDNDVSNGQATASTSGLHSSLTFSSRSSSCLKQMPPQIAENGNESLEENYDQSRNLVNDNGSSKCYIPSFTNEFWESSAFNAPKTENEDEIMFSTSNGLESQETDFSYQNHGLTHHLSLPSSSTKMSSIEMFLQIQGSVPYKIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPRSEKPTSTADMLDLAVEHIKDLQQQVQILSDRKAKCKCTRNEKHYTRTCA*







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